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Let’s get started!
Table of Contents
Object.assign()
is the first method we’ll cover. This method is used to copy values from one or more source objects to a target object.
const array = ["Johnny", "Billy", "Sandy"]
const newObject = Object.assign({}, array)
// newObject = { "0": "Johnny", "1": "Billy", "2": "Sandy" }
In this method, we’re going to loop over each item in your array and add each one as a new property in a new object.
Here’s the full code:
const array = ["Johnny", "Billy", "Sandy"]
let newObject = {}
for (let i=0; i < array.length; i++) {
if (array[i] !== undefined) {
newObject[i] = array[i]
}
}
// newObject = { "0": "Johnny", "1": "Billy", "2": "Sandy" }
First, we declare an empty object called newObject
that will hold the properties we will move over from the array.
Then, we use a for
loop to iterate over each value in the array. If the value doesn’t have an undefined
value, we add the value as a new property to the newObject
.
The last example is the reduce()
method. Reduce()
method executes a provided function for each value of the array and the return values are stored in an accumulator, which is an object in this case.
const array = ["Johnny", "Billy", "Sandy"]
const newObject = array.reduce(function(result, item, index) {
result[index] = item
return result
}, {})
// newObject = { "0": "Johnny", "1": "Billy", "2": "Sandy" }
Did we miss a method you use? Let us know in the comments.
Thanks for reading and happy coding!
If you liked this post, share it with all of your programming buddies!
Originally published by Nick Major at https://coderrocketfuel.com
#node-js #arrays
1653475560
msgpack.php
A pure PHP implementation of the MessagePack serialization format.
The recommended way to install the library is through Composer:
composer require rybakit/msgpack
To pack values you can either use an instance of a Packer
:
$packer = new Packer();
$packed = $packer->pack($value);
or call a static method on the MessagePack
class:
$packed = MessagePack::pack($value);
In the examples above, the method pack
automatically packs a value depending on its type. However, not all PHP types can be uniquely translated to MessagePack types. For example, the MessagePack format defines map
and array
types, which are represented by a single array
type in PHP. By default, the packer will pack a PHP array as a MessagePack array if it has sequential numeric keys, starting from 0
and as a MessagePack map otherwise:
$mpArr1 = $packer->pack([1, 2]); // MP array [1, 2]
$mpArr2 = $packer->pack([0 => 1, 1 => 2]); // MP array [1, 2]
$mpMap1 = $packer->pack([0 => 1, 2 => 3]); // MP map {0: 1, 2: 3}
$mpMap2 = $packer->pack([1 => 2, 2 => 3]); // MP map {1: 2, 2: 3}
$mpMap3 = $packer->pack(['a' => 1, 'b' => 2]); // MP map {a: 1, b: 2}
However, sometimes you need to pack a sequential array as a MessagePack map. To do this, use the packMap
method:
$mpMap = $packer->packMap([1, 2]); // {0: 1, 1: 2}
Here is a list of type-specific packing methods:
$packer->packNil(); // MP nil
$packer->packBool(true); // MP bool
$packer->packInt(42); // MP int
$packer->packFloat(M_PI); // MP float (32 or 64)
$packer->packFloat32(M_PI); // MP float 32
$packer->packFloat64(M_PI); // MP float 64
$packer->packStr('foo'); // MP str
$packer->packBin("\x80"); // MP bin
$packer->packArray([1, 2]); // MP array
$packer->packMap(['a' => 1]); // MP map
$packer->packExt(1, "\xaa"); // MP ext
Check the "Custom types" section below on how to pack custom types.
The Packer
object supports a number of bitmask-based options for fine-tuning the packing process (defaults are in bold):
Name | Description |
---|---|
FORCE_STR | Forces PHP strings to be packed as MessagePack UTF-8 strings |
FORCE_BIN | Forces PHP strings to be packed as MessagePack binary data |
DETECT_STR_BIN | Detects MessagePack str/bin type automatically |
FORCE_ARR | Forces PHP arrays to be packed as MessagePack arrays |
FORCE_MAP | Forces PHP arrays to be packed as MessagePack maps |
DETECT_ARR_MAP | Detects MessagePack array/map type automatically |
FORCE_FLOAT32 | Forces PHP floats to be packed as 32-bits MessagePack floats |
FORCE_FLOAT64 | Forces PHP floats to be packed as 64-bits MessagePack floats |
The type detection mode (
DETECT_STR_BIN
/DETECT_ARR_MAP
) adds some overhead which can be noticed when you pack large (16- and 32-bit) arrays or strings. However, if you know the value type in advance (for example, you only work with UTF-8 strings or/and associative arrays), you can eliminate this overhead by forcing the packer to use the appropriate type, which will save it from running the auto-detection routine. Another option is to explicitly specify the value type. The library provides 2 auxiliary classes for this,Map
andBin
. Check the "Custom types" section below for details.
Examples:
// detect str/bin type and pack PHP 64-bit floats (doubles) to MP 32-bit floats
$packer = new Packer(PackOptions::DETECT_STR_BIN | PackOptions::FORCE_FLOAT32);
// these will throw MessagePack\Exception\InvalidOptionException
$packer = new Packer(PackOptions::FORCE_STR | PackOptions::FORCE_BIN);
$packer = new Packer(PackOptions::FORCE_FLOAT32 | PackOptions::FORCE_FLOAT64);
To unpack data you can either use an instance of a BufferUnpacker
:
$unpacker = new BufferUnpacker();
$unpacker->reset($packed);
$value = $unpacker->unpack();
or call a static method on the MessagePack
class:
$value = MessagePack::unpack($packed);
If the packed data is received in chunks (e.g. when reading from a stream), use the tryUnpack
method, which attempts to unpack data and returns an array of unpacked messages (if any) instead of throwing an InsufficientDataException
:
while ($chunk = ...) {
$unpacker->append($chunk);
if ($messages = $unpacker->tryUnpack()) {
return $messages;
}
}
If you want to unpack from a specific position in a buffer, use seek
:
$unpacker->seek(42); // set position equal to 42 bytes
$unpacker->seek(-8); // set position to 8 bytes before the end of the buffer
To skip bytes from the current position, use skip
:
$unpacker->skip(10); // set position to 10 bytes ahead of the current position
To get the number of remaining (unread) bytes in the buffer:
$unreadBytesCount = $unpacker->getRemainingCount();
To check whether the buffer has unread data:
$hasUnreadBytes = $unpacker->hasRemaining();
If needed, you can remove already read data from the buffer by calling:
$releasedBytesCount = $unpacker->release();
With the read
method you can read raw (packed) data:
$packedData = $unpacker->read(2); // read 2 bytes
Besides the above methods BufferUnpacker
provides type-specific unpacking methods, namely:
$unpacker->unpackNil(); // PHP null
$unpacker->unpackBool(); // PHP bool
$unpacker->unpackInt(); // PHP int
$unpacker->unpackFloat(); // PHP float
$unpacker->unpackStr(); // PHP UTF-8 string
$unpacker->unpackBin(); // PHP binary string
$unpacker->unpackArray(); // PHP sequential array
$unpacker->unpackMap(); // PHP associative array
$unpacker->unpackExt(); // PHP MessagePack\Type\Ext object
The BufferUnpacker
object supports a number of bitmask-based options for fine-tuning the unpacking process (defaults are in bold):
Name | Description |
---|---|
BIGINT_AS_STR | Converts overflowed integers to strings [1] |
BIGINT_AS_GMP | Converts overflowed integers to GMP objects [2] |
BIGINT_AS_DEC | Converts overflowed integers to Decimal\Decimal objects [3] |
1. The binary MessagePack format has unsigned 64-bit as its largest integer data type, but PHP does not support such integers, which means that an overflow can occur during unpacking.
2. Make sure the GMP extension is enabled.
3. Make sure the Decimal extension is enabled.
Examples:
$packedUint64 = "\xcf"."\xff\xff\xff\xff"."\xff\xff\xff\xff";
$unpacker = new BufferUnpacker($packedUint64);
var_dump($unpacker->unpack()); // string(20) "18446744073709551615"
$unpacker = new BufferUnpacker($packedUint64, UnpackOptions::BIGINT_AS_GMP);
var_dump($unpacker->unpack()); // object(GMP) {...}
$unpacker = new BufferUnpacker($packedUint64, UnpackOptions::BIGINT_AS_DEC);
var_dump($unpacker->unpack()); // object(Decimal\Decimal) {...}
In addition to the basic types, the library provides functionality to serialize and deserialize arbitrary types. This can be done in several ways, depending on your use case. Let's take a look at them.
If you need to serialize an instance of one of your classes into one of the basic MessagePack types, the best way to do this is to implement the CanBePacked interface in the class. A good example of such a class is the Map
type class that comes with the library. This type is useful when you want to explicitly specify that a given PHP array should be packed as a MessagePack map without triggering an automatic type detection routine:
$packer = new Packer();
$packedMap = $packer->pack(new Map([1, 2, 3]));
$packedArray = $packer->pack([1, 2, 3]);
More type examples can be found in the src/Type directory.
As with type objects, type transformers are only responsible for serializing values. They should be used when you need to serialize a value that does not implement the CanBePacked interface. Examples of such values could be instances of built-in or third-party classes that you don't own, or non-objects such as resources.
A transformer class must implement the CanPack interface. To use a transformer, it must first be registered in the packer. Here is an example of how to serialize PHP streams into the MessagePack bin
format type using one of the supplied transformers, StreamTransformer
:
$packer = new Packer(null, [new StreamTransformer()]);
$packedBin = $packer->pack(fopen('/path/to/file', 'r+'));
More type transformer examples can be found in the src/TypeTransformer directory.
In contrast to the cases described above, extensions are intended to handle extension types and are responsible for both serialization and deserialization of values (types).
An extension class must implement the Extension interface. To use an extension, it must first be registered in the packer and the unpacker.
The MessagePack specification divides extension types into two groups: predefined and application-specific. Currently, there is only one predefined type in the specification, Timestamp.
Timestamp
The Timestamp extension type is a predefined type. Support for this type in the library is done through the TimestampExtension
class. This class is responsible for handling Timestamp
objects, which represent the number of seconds and optional adjustment in nanoseconds:
$timestampExtension = new TimestampExtension();
$packer = new Packer();
$packer = $packer->extendWith($timestampExtension);
$unpacker = new BufferUnpacker();
$unpacker = $unpacker->extendWith($timestampExtension);
$packedTimestamp = $packer->pack(Timestamp::now());
$timestamp = $unpacker->reset($packedTimestamp)->unpack();
$seconds = $timestamp->getSeconds();
$nanoseconds = $timestamp->getNanoseconds();
When using the MessagePack
class, the Timestamp extension is already registered:
$packedTimestamp = MessagePack::pack(Timestamp::now());
$timestamp = MessagePack::unpack($packedTimestamp);
Application-specific extensions
In addition, the format can be extended with your own types. For example, to make the built-in PHP DateTime
objects first-class citizens in your code, you can create a corresponding extension, as shown in the example. Please note, that custom extensions have to be registered with a unique extension ID (an integer from 0
to 127
).
More extension examples can be found in the examples/MessagePack directory.
To learn more about how extension types can be useful, check out this article.
If an error occurs during packing/unpacking, a PackingFailedException
or an UnpackingFailedException
will be thrown, respectively. In addition, an InsufficientDataException
can be thrown during unpacking.
An InvalidOptionException
will be thrown in case an invalid option (or a combination of mutually exclusive options) is used.
Run tests as follows:
vendor/bin/phpunit
Also, if you already have Docker installed, you can run the tests in a docker container. First, create a container:
./dockerfile.sh | docker build -t msgpack -
The command above will create a container named msgpack
with PHP 8.1 runtime. You may change the default runtime by defining the PHP_IMAGE
environment variable:
PHP_IMAGE='php:8.0-cli' ./dockerfile.sh | docker build -t msgpack -
See a list of various images here.
Then run the unit tests:
docker run --rm -v $PWD:/msgpack -w /msgpack msgpack
To ensure that the unpacking works correctly with malformed/semi-malformed data, you can use a testing technique called Fuzzing. The library ships with a help file (target) for PHP-Fuzzer and can be used as follows:
php-fuzzer fuzz tests/fuzz_buffer_unpacker.php
To check performance, run:
php -n -dzend_extension=opcache.so \
-dpcre.jit=1 -dopcache.enable=1 -dopcache.enable_cli=1 \
tests/bench.php
Example output
Filter: MessagePack\Tests\Perf\Filter\ListFilter
Rounds: 3
Iterations: 100000
=============================================
Test/Target Packer BufferUnpacker
---------------------------------------------
nil .................. 0.0030 ........ 0.0139
false ................ 0.0037 ........ 0.0144
true ................. 0.0040 ........ 0.0137
7-bit uint #1 ........ 0.0052 ........ 0.0120
7-bit uint #2 ........ 0.0059 ........ 0.0114
7-bit uint #3 ........ 0.0061 ........ 0.0119
5-bit sint #1 ........ 0.0067 ........ 0.0126
5-bit sint #2 ........ 0.0064 ........ 0.0132
5-bit sint #3 ........ 0.0066 ........ 0.0135
8-bit uint #1 ........ 0.0078 ........ 0.0200
8-bit uint #2 ........ 0.0077 ........ 0.0212
8-bit uint #3 ........ 0.0086 ........ 0.0203
16-bit uint #1 ....... 0.0111 ........ 0.0271
16-bit uint #2 ....... 0.0115 ........ 0.0260
16-bit uint #3 ....... 0.0103 ........ 0.0273
32-bit uint #1 ....... 0.0116 ........ 0.0326
32-bit uint #2 ....... 0.0118 ........ 0.0332
32-bit uint #3 ....... 0.0127 ........ 0.0325
64-bit uint #1 ....... 0.0140 ........ 0.0277
64-bit uint #2 ....... 0.0134 ........ 0.0294
64-bit uint #3 ....... 0.0134 ........ 0.0281
8-bit int #1 ......... 0.0086 ........ 0.0241
8-bit int #2 ......... 0.0089 ........ 0.0225
8-bit int #3 ......... 0.0085 ........ 0.0229
16-bit int #1 ........ 0.0118 ........ 0.0280
16-bit int #2 ........ 0.0121 ........ 0.0270
16-bit int #3 ........ 0.0109 ........ 0.0274
32-bit int #1 ........ 0.0128 ........ 0.0346
32-bit int #2 ........ 0.0118 ........ 0.0339
32-bit int #3 ........ 0.0135 ........ 0.0368
64-bit int #1 ........ 0.0138 ........ 0.0276
64-bit int #2 ........ 0.0132 ........ 0.0286
64-bit int #3 ........ 0.0137 ........ 0.0274
64-bit int #4 ........ 0.0180 ........ 0.0285
64-bit float #1 ...... 0.0134 ........ 0.0284
64-bit float #2 ...... 0.0125 ........ 0.0275
64-bit float #3 ...... 0.0126 ........ 0.0283
fix string #1 ........ 0.0035 ........ 0.0133
fix string #2 ........ 0.0094 ........ 0.0216
fix string #3 ........ 0.0094 ........ 0.0222
fix string #4 ........ 0.0091 ........ 0.0241
8-bit string #1 ...... 0.0122 ........ 0.0301
8-bit string #2 ...... 0.0118 ........ 0.0304
8-bit string #3 ...... 0.0119 ........ 0.0315
16-bit string #1 ..... 0.0150 ........ 0.0388
16-bit string #2 ..... 0.1545 ........ 0.1665
32-bit string ........ 0.1570 ........ 0.1756
wide char string #1 .. 0.0091 ........ 0.0236
wide char string #2 .. 0.0122 ........ 0.0313
8-bit binary #1 ...... 0.0100 ........ 0.0302
8-bit binary #2 ...... 0.0123 ........ 0.0324
8-bit binary #3 ...... 0.0126 ........ 0.0327
16-bit binary ........ 0.0168 ........ 0.0372
32-bit binary ........ 0.1588 ........ 0.1754
fix array #1 ......... 0.0042 ........ 0.0131
fix array #2 ......... 0.0294 ........ 0.0367
fix array #3 ......... 0.0412 ........ 0.0472
16-bit array #1 ...... 0.1378 ........ 0.1596
16-bit array #2 ........... S ............. S
32-bit array .............. S ............. S
complex array ........ 0.1865 ........ 0.2283
fix map #1 ........... 0.0725 ........ 0.1048
fix map #2 ........... 0.0319 ........ 0.0405
fix map #3 ........... 0.0356 ........ 0.0665
fix map #4 ........... 0.0465 ........ 0.0497
16-bit map #1 ........ 0.2540 ........ 0.3028
16-bit map #2 ............. S ............. S
32-bit map ................ S ............. S
complex map .......... 0.2372 ........ 0.2710
fixext 1 ............. 0.0283 ........ 0.0358
fixext 2 ............. 0.0291 ........ 0.0371
fixext 4 ............. 0.0302 ........ 0.0355
fixext 8 ............. 0.0288 ........ 0.0384
fixext 16 ............ 0.0293 ........ 0.0359
8-bit ext ............ 0.0302 ........ 0.0439
16-bit ext ........... 0.0334 ........ 0.0499
32-bit ext ........... 0.1845 ........ 0.1888
32-bit timestamp #1 .. 0.0337 ........ 0.0547
32-bit timestamp #2 .. 0.0335 ........ 0.0560
64-bit timestamp #1 .. 0.0371 ........ 0.0575
64-bit timestamp #2 .. 0.0374 ........ 0.0542
64-bit timestamp #3 .. 0.0356 ........ 0.0533
96-bit timestamp #1 .. 0.0362 ........ 0.0699
96-bit timestamp #2 .. 0.0381 ........ 0.0701
96-bit timestamp #3 .. 0.0367 ........ 0.0687
=============================================
Total 2.7618 4.0820
Skipped 4 4
Failed 0 0
Ignored 0 0
With JIT:
php -n -dzend_extension=opcache.so \
-dpcre.jit=1 -dopcache.jit_buffer_size=64M -dopcache.jit=tracing -dopcache.enable=1 -dopcache.enable_cli=1 \
tests/bench.php
Example output
Filter: MessagePack\Tests\Perf\Filter\ListFilter
Rounds: 3
Iterations: 100000
=============================================
Test/Target Packer BufferUnpacker
---------------------------------------------
nil .................. 0.0005 ........ 0.0054
false ................ 0.0004 ........ 0.0059
true ................. 0.0004 ........ 0.0059
7-bit uint #1 ........ 0.0010 ........ 0.0047
7-bit uint #2 ........ 0.0010 ........ 0.0046
7-bit uint #3 ........ 0.0010 ........ 0.0046
5-bit sint #1 ........ 0.0025 ........ 0.0046
5-bit sint #2 ........ 0.0023 ........ 0.0046
5-bit sint #3 ........ 0.0024 ........ 0.0045
8-bit uint #1 ........ 0.0043 ........ 0.0081
8-bit uint #2 ........ 0.0043 ........ 0.0079
8-bit uint #3 ........ 0.0041 ........ 0.0080
16-bit uint #1 ....... 0.0064 ........ 0.0095
16-bit uint #2 ....... 0.0064 ........ 0.0091
16-bit uint #3 ....... 0.0064 ........ 0.0094
32-bit uint #1 ....... 0.0085 ........ 0.0114
32-bit uint #2 ....... 0.0077 ........ 0.0122
32-bit uint #3 ....... 0.0077 ........ 0.0120
64-bit uint #1 ....... 0.0085 ........ 0.0159
64-bit uint #2 ....... 0.0086 ........ 0.0157
64-bit uint #3 ....... 0.0086 ........ 0.0158
8-bit int #1 ......... 0.0042 ........ 0.0080
8-bit int #2 ......... 0.0042 ........ 0.0080
8-bit int #3 ......... 0.0042 ........ 0.0081
16-bit int #1 ........ 0.0065 ........ 0.0095
16-bit int #2 ........ 0.0065 ........ 0.0090
16-bit int #3 ........ 0.0056 ........ 0.0085
32-bit int #1 ........ 0.0067 ........ 0.0107
32-bit int #2 ........ 0.0066 ........ 0.0106
32-bit int #3 ........ 0.0063 ........ 0.0104
64-bit int #1 ........ 0.0072 ........ 0.0162
64-bit int #2 ........ 0.0073 ........ 0.0174
64-bit int #3 ........ 0.0072 ........ 0.0164
64-bit int #4 ........ 0.0077 ........ 0.0161
64-bit float #1 ...... 0.0053 ........ 0.0135
64-bit float #2 ...... 0.0053 ........ 0.0135
64-bit float #3 ...... 0.0052 ........ 0.0135
fix string #1 ....... -0.0002 ........ 0.0044
fix string #2 ........ 0.0035 ........ 0.0067
fix string #3 ........ 0.0035 ........ 0.0077
fix string #4 ........ 0.0033 ........ 0.0078
8-bit string #1 ...... 0.0059 ........ 0.0110
8-bit string #2 ...... 0.0063 ........ 0.0121
8-bit string #3 ...... 0.0064 ........ 0.0124
16-bit string #1 ..... 0.0099 ........ 0.0146
16-bit string #2 ..... 0.1522 ........ 0.1474
32-bit string ........ 0.1511 ........ 0.1483
wide char string #1 .. 0.0039 ........ 0.0084
wide char string #2 .. 0.0073 ........ 0.0123
8-bit binary #1 ...... 0.0040 ........ 0.0112
8-bit binary #2 ...... 0.0075 ........ 0.0123
8-bit binary #3 ...... 0.0077 ........ 0.0129
16-bit binary ........ 0.0096 ........ 0.0145
32-bit binary ........ 0.1535 ........ 0.1479
fix array #1 ......... 0.0008 ........ 0.0061
fix array #2 ......... 0.0121 ........ 0.0165
fix array #3 ......... 0.0193 ........ 0.0222
16-bit array #1 ...... 0.0607 ........ 0.0479
16-bit array #2 ........... S ............. S
32-bit array .............. S ............. S
complex array ........ 0.0749 ........ 0.0824
fix map #1 ........... 0.0329 ........ 0.0431
fix map #2 ........... 0.0161 ........ 0.0189
fix map #3 ........... 0.0205 ........ 0.0262
fix map #4 ........... 0.0252 ........ 0.0205
16-bit map #1 ........ 0.1016 ........ 0.0927
16-bit map #2 ............. S ............. S
32-bit map ................ S ............. S
complex map .......... 0.1096 ........ 0.1030
fixext 1 ............. 0.0157 ........ 0.0161
fixext 2 ............. 0.0175 ........ 0.0183
fixext 4 ............. 0.0156 ........ 0.0185
fixext 8 ............. 0.0163 ........ 0.0184
fixext 16 ............ 0.0164 ........ 0.0182
8-bit ext ............ 0.0158 ........ 0.0207
16-bit ext ........... 0.0203 ........ 0.0219
32-bit ext ........... 0.1614 ........ 0.1539
32-bit timestamp #1 .. 0.0195 ........ 0.0249
32-bit timestamp #2 .. 0.0188 ........ 0.0260
64-bit timestamp #1 .. 0.0207 ........ 0.0281
64-bit timestamp #2 .. 0.0212 ........ 0.0291
64-bit timestamp #3 .. 0.0207 ........ 0.0295
96-bit timestamp #1 .. 0.0222 ........ 0.0358
96-bit timestamp #2 .. 0.0228 ........ 0.0353
96-bit timestamp #3 .. 0.0210 ........ 0.0319
=============================================
Total 1.6432 1.9674
Skipped 4 4
Failed 0 0
Ignored 0 0
You may change default benchmark settings by defining the following environment variables:
Name | Default |
---|---|
MP_BENCH_TARGETS | pure_p,pure_u , see a list of available targets |
MP_BENCH_ITERATIONS | 100_000 |
MP_BENCH_DURATION | not set |
MP_BENCH_ROUNDS | 3 |
MP_BENCH_TESTS | -@slow , see a list of available tests |
For example:
export MP_BENCH_TARGETS=pure_p
export MP_BENCH_ITERATIONS=1000000
export MP_BENCH_ROUNDS=5
# a comma separated list of test names
export MP_BENCH_TESTS='complex array, complex map'
# or a group name
# export MP_BENCH_TESTS='-@slow' // @pecl_comp
# or a regexp
# export MP_BENCH_TESTS='/complex (array|map)/'
Another example, benchmarking both the library and the PECL extension:
MP_BENCH_TARGETS=pure_p,pure_u,pecl_p,pecl_u \
php -n -dextension=msgpack.so -dzend_extension=opcache.so \
-dpcre.jit=1 -dopcache.enable=1 -dopcache.enable_cli=1 \
tests/bench.php
Example output
Filter: MessagePack\Tests\Perf\Filter\ListFilter
Rounds: 3
Iterations: 100000
===========================================================================
Test/Target Packer BufferUnpacker msgpack_pack msgpack_unpack
---------------------------------------------------------------------------
nil .................. 0.0031 ........ 0.0141 ...... 0.0055 ........ 0.0064
false ................ 0.0039 ........ 0.0154 ...... 0.0056 ........ 0.0053
true ................. 0.0038 ........ 0.0139 ...... 0.0056 ........ 0.0044
7-bit uint #1 ........ 0.0061 ........ 0.0110 ...... 0.0059 ........ 0.0046
7-bit uint #2 ........ 0.0065 ........ 0.0119 ...... 0.0042 ........ 0.0029
7-bit uint #3 ........ 0.0054 ........ 0.0117 ...... 0.0045 ........ 0.0025
5-bit sint #1 ........ 0.0047 ........ 0.0103 ...... 0.0038 ........ 0.0022
5-bit sint #2 ........ 0.0048 ........ 0.0117 ...... 0.0038 ........ 0.0022
5-bit sint #3 ........ 0.0046 ........ 0.0102 ...... 0.0038 ........ 0.0023
8-bit uint #1 ........ 0.0063 ........ 0.0174 ...... 0.0039 ........ 0.0031
8-bit uint #2 ........ 0.0063 ........ 0.0167 ...... 0.0040 ........ 0.0029
8-bit uint #3 ........ 0.0063 ........ 0.0168 ...... 0.0039 ........ 0.0030
16-bit uint #1 ....... 0.0092 ........ 0.0222 ...... 0.0049 ........ 0.0030
16-bit uint #2 ....... 0.0096 ........ 0.0227 ...... 0.0042 ........ 0.0046
16-bit uint #3 ....... 0.0123 ........ 0.0274 ...... 0.0059 ........ 0.0051
32-bit uint #1 ....... 0.0136 ........ 0.0331 ...... 0.0060 ........ 0.0048
32-bit uint #2 ....... 0.0130 ........ 0.0336 ...... 0.0070 ........ 0.0048
32-bit uint #3 ....... 0.0127 ........ 0.0329 ...... 0.0051 ........ 0.0048
64-bit uint #1 ....... 0.0126 ........ 0.0268 ...... 0.0055 ........ 0.0049
64-bit uint #2 ....... 0.0135 ........ 0.0281 ...... 0.0052 ........ 0.0046
64-bit uint #3 ....... 0.0131 ........ 0.0274 ...... 0.0069 ........ 0.0044
8-bit int #1 ......... 0.0077 ........ 0.0236 ...... 0.0058 ........ 0.0044
8-bit int #2 ......... 0.0087 ........ 0.0244 ...... 0.0058 ........ 0.0048
8-bit int #3 ......... 0.0084 ........ 0.0241 ...... 0.0055 ........ 0.0049
16-bit int #1 ........ 0.0112 ........ 0.0271 ...... 0.0048 ........ 0.0045
16-bit int #2 ........ 0.0124 ........ 0.0292 ...... 0.0057 ........ 0.0049
16-bit int #3 ........ 0.0118 ........ 0.0270 ...... 0.0058 ........ 0.0050
32-bit int #1 ........ 0.0137 ........ 0.0366 ...... 0.0058 ........ 0.0051
32-bit int #2 ........ 0.0133 ........ 0.0366 ...... 0.0056 ........ 0.0049
32-bit int #3 ........ 0.0129 ........ 0.0350 ...... 0.0052 ........ 0.0048
64-bit int #1 ........ 0.0145 ........ 0.0254 ...... 0.0034 ........ 0.0025
64-bit int #2 ........ 0.0097 ........ 0.0214 ...... 0.0034 ........ 0.0025
64-bit int #3 ........ 0.0096 ........ 0.0287 ...... 0.0059 ........ 0.0050
64-bit int #4 ........ 0.0143 ........ 0.0277 ...... 0.0059 ........ 0.0046
64-bit float #1 ...... 0.0134 ........ 0.0281 ...... 0.0057 ........ 0.0052
64-bit float #2 ...... 0.0141 ........ 0.0281 ...... 0.0057 ........ 0.0050
64-bit float #3 ...... 0.0144 ........ 0.0282 ...... 0.0057 ........ 0.0050
fix string #1 ........ 0.0036 ........ 0.0143 ...... 0.0066 ........ 0.0053
fix string #2 ........ 0.0107 ........ 0.0222 ...... 0.0065 ........ 0.0068
fix string #3 ........ 0.0116 ........ 0.0245 ...... 0.0063 ........ 0.0069
fix string #4 ........ 0.0105 ........ 0.0253 ...... 0.0083 ........ 0.0077
8-bit string #1 ...... 0.0126 ........ 0.0318 ...... 0.0075 ........ 0.0088
8-bit string #2 ...... 0.0121 ........ 0.0295 ...... 0.0076 ........ 0.0086
8-bit string #3 ...... 0.0125 ........ 0.0293 ...... 0.0130 ........ 0.0093
16-bit string #1 ..... 0.0159 ........ 0.0368 ...... 0.0117 ........ 0.0086
16-bit string #2 ..... 0.1547 ........ 0.1686 ...... 0.1516 ........ 0.1373
32-bit string ........ 0.1558 ........ 0.1729 ...... 0.1511 ........ 0.1396
wide char string #1 .. 0.0098 ........ 0.0237 ...... 0.0066 ........ 0.0065
wide char string #2 .. 0.0128 ........ 0.0291 ...... 0.0061 ........ 0.0082
8-bit binary #1 ........... I ............. I ........... F ............. I
8-bit binary #2 ........... I ............. I ........... F ............. I
8-bit binary #3 ........... I ............. I ........... F ............. I
16-bit binary ............. I ............. I ........... F ............. I
32-bit binary ............. I ............. I ........... F ............. I
fix array #1 ......... 0.0040 ........ 0.0129 ...... 0.0120 ........ 0.0058
fix array #2 ......... 0.0279 ........ 0.0390 ...... 0.0143 ........ 0.0165
fix array #3 ......... 0.0415 ........ 0.0463 ...... 0.0162 ........ 0.0187
16-bit array #1 ...... 0.1349 ........ 0.1628 ...... 0.0334 ........ 0.0341
16-bit array #2 ........... S ............. S ........... S ............. S
32-bit array .............. S ............. S ........... S ............. S
complex array ............. I ............. I ........... F ............. F
fix map #1 ................ I ............. I ........... F ............. I
fix map #2 ........... 0.0345 ........ 0.0391 ...... 0.0143 ........ 0.0168
fix map #3 ................ I ............. I ........... F ............. I
fix map #4 ........... 0.0459 ........ 0.0473 ...... 0.0151 ........ 0.0163
16-bit map #1 ........ 0.2518 ........ 0.2962 ...... 0.0400 ........ 0.0490
16-bit map #2 ............. S ............. S ........... S ............. S
32-bit map ................ S ............. S ........... S ............. S
complex map .......... 0.2380 ........ 0.2682 ...... 0.0545 ........ 0.0579
fixext 1 .................. I ............. I ........... F ............. F
fixext 2 .................. I ............. I ........... F ............. F
fixext 4 .................. I ............. I ........... F ............. F
fixext 8 .................. I ............. I ........... F ............. F
fixext 16 ................. I ............. I ........... F ............. F
8-bit ext ................. I ............. I ........... F ............. F
16-bit ext ................ I ............. I ........... F ............. F
32-bit ext ................ I ............. I ........... F ............. F
32-bit timestamp #1 ....... I ............. I ........... F ............. F
32-bit timestamp #2 ....... I ............. I ........... F ............. F
64-bit timestamp #1 ....... I ............. I ........... F ............. F
64-bit timestamp #2 ....... I ............. I ........... F ............. F
64-bit timestamp #3 ....... I ............. I ........... F ............. F
96-bit timestamp #1 ....... I ............. I ........... F ............. F
96-bit timestamp #2 ....... I ............. I ........... F ............. F
96-bit timestamp #3 ....... I ............. I ........... F ............. F
===========================================================================
Total 1.5625 2.3866 0.7735 0.7243
Skipped 4 4 4 4
Failed 0 0 24 17
Ignored 24 24 0 7
With JIT:
MP_BENCH_TARGETS=pure_p,pure_u,pecl_p,pecl_u \
php -n -dextension=msgpack.so -dzend_extension=opcache.so \
-dpcre.jit=1 -dopcache.jit_buffer_size=64M -dopcache.jit=tracing -dopcache.enable=1 -dopcache.enable_cli=1 \
tests/bench.php
Example output
Filter: MessagePack\Tests\Perf\Filter\ListFilter
Rounds: 3
Iterations: 100000
===========================================================================
Test/Target Packer BufferUnpacker msgpack_pack msgpack_unpack
---------------------------------------------------------------------------
nil .................. 0.0001 ........ 0.0052 ...... 0.0053 ........ 0.0042
false ................ 0.0007 ........ 0.0060 ...... 0.0057 ........ 0.0043
true ................. 0.0008 ........ 0.0060 ...... 0.0056 ........ 0.0041
7-bit uint #1 ........ 0.0031 ........ 0.0046 ...... 0.0062 ........ 0.0041
7-bit uint #2 ........ 0.0021 ........ 0.0043 ...... 0.0062 ........ 0.0041
7-bit uint #3 ........ 0.0022 ........ 0.0044 ...... 0.0061 ........ 0.0040
5-bit sint #1 ........ 0.0030 ........ 0.0048 ...... 0.0062 ........ 0.0040
5-bit sint #2 ........ 0.0032 ........ 0.0046 ...... 0.0062 ........ 0.0040
5-bit sint #3 ........ 0.0031 ........ 0.0046 ...... 0.0062 ........ 0.0040
8-bit uint #1 ........ 0.0054 ........ 0.0079 ...... 0.0062 ........ 0.0050
8-bit uint #2 ........ 0.0051 ........ 0.0079 ...... 0.0064 ........ 0.0044
8-bit uint #3 ........ 0.0051 ........ 0.0082 ...... 0.0062 ........ 0.0044
16-bit uint #1 ....... 0.0077 ........ 0.0094 ...... 0.0065 ........ 0.0045
16-bit uint #2 ....... 0.0077 ........ 0.0094 ...... 0.0063 ........ 0.0045
16-bit uint #3 ....... 0.0077 ........ 0.0095 ...... 0.0064 ........ 0.0047
32-bit uint #1 ....... 0.0088 ........ 0.0119 ...... 0.0063 ........ 0.0043
32-bit uint #2 ....... 0.0089 ........ 0.0117 ...... 0.0062 ........ 0.0039
32-bit uint #3 ....... 0.0089 ........ 0.0118 ...... 0.0063 ........ 0.0044
64-bit uint #1 ....... 0.0097 ........ 0.0155 ...... 0.0063 ........ 0.0045
64-bit uint #2 ....... 0.0095 ........ 0.0153 ...... 0.0061 ........ 0.0045
64-bit uint #3 ....... 0.0096 ........ 0.0156 ...... 0.0063 ........ 0.0047
8-bit int #1 ......... 0.0053 ........ 0.0083 ...... 0.0062 ........ 0.0044
8-bit int #2 ......... 0.0052 ........ 0.0080 ...... 0.0062 ........ 0.0044
8-bit int #3 ......... 0.0052 ........ 0.0080 ...... 0.0062 ........ 0.0043
16-bit int #1 ........ 0.0089 ........ 0.0097 ...... 0.0069 ........ 0.0046
16-bit int #2 ........ 0.0075 ........ 0.0093 ...... 0.0063 ........ 0.0043
16-bit int #3 ........ 0.0075 ........ 0.0094 ...... 0.0062 ........ 0.0046
32-bit int #1 ........ 0.0086 ........ 0.0122 ...... 0.0063 ........ 0.0044
32-bit int #2 ........ 0.0087 ........ 0.0120 ...... 0.0066 ........ 0.0046
32-bit int #3 ........ 0.0086 ........ 0.0121 ...... 0.0060 ........ 0.0044
64-bit int #1 ........ 0.0096 ........ 0.0149 ...... 0.0060 ........ 0.0045
64-bit int #2 ........ 0.0096 ........ 0.0157 ...... 0.0062 ........ 0.0044
64-bit int #3 ........ 0.0096 ........ 0.0160 ...... 0.0063 ........ 0.0046
64-bit int #4 ........ 0.0097 ........ 0.0157 ...... 0.0061 ........ 0.0044
64-bit float #1 ...... 0.0079 ........ 0.0153 ...... 0.0056 ........ 0.0044
64-bit float #2 ...... 0.0079 ........ 0.0152 ...... 0.0057 ........ 0.0045
64-bit float #3 ...... 0.0079 ........ 0.0155 ...... 0.0057 ........ 0.0044
fix string #1 ........ 0.0010 ........ 0.0045 ...... 0.0071 ........ 0.0044
fix string #2 ........ 0.0048 ........ 0.0075 ...... 0.0070 ........ 0.0060
fix string #3 ........ 0.0048 ........ 0.0086 ...... 0.0068 ........ 0.0060
fix string #4 ........ 0.0050 ........ 0.0088 ...... 0.0070 ........ 0.0059
8-bit string #1 ...... 0.0081 ........ 0.0129 ...... 0.0069 ........ 0.0062
8-bit string #2 ...... 0.0086 ........ 0.0128 ...... 0.0069 ........ 0.0065
8-bit string #3 ...... 0.0086 ........ 0.0126 ...... 0.0115 ........ 0.0065
16-bit string #1 ..... 0.0105 ........ 0.0137 ...... 0.0128 ........ 0.0068
16-bit string #2 ..... 0.1510 ........ 0.1486 ...... 0.1526 ........ 0.1391
32-bit string ........ 0.1517 ........ 0.1475 ...... 0.1504 ........ 0.1370
wide char string #1 .. 0.0044 ........ 0.0085 ...... 0.0067 ........ 0.0057
wide char string #2 .. 0.0081 ........ 0.0125 ...... 0.0069 ........ 0.0063
8-bit binary #1 ........... I ............. I ........... F ............. I
8-bit binary #2 ........... I ............. I ........... F ............. I
8-bit binary #3 ........... I ............. I ........... F ............. I
16-bit binary ............. I ............. I ........... F ............. I
32-bit binary ............. I ............. I ........... F ............. I
fix array #1 ......... 0.0014 ........ 0.0059 ...... 0.0132 ........ 0.0055
fix array #2 ......... 0.0146 ........ 0.0156 ...... 0.0155 ........ 0.0148
fix array #3 ......... 0.0211 ........ 0.0229 ...... 0.0179 ........ 0.0180
16-bit array #1 ...... 0.0673 ........ 0.0498 ...... 0.0343 ........ 0.0388
16-bit array #2 ........... S ............. S ........... S ............. S
32-bit array .............. S ............. S ........... S ............. S
complex array ............. I ............. I ........... F ............. F
fix map #1 ................ I ............. I ........... F ............. I
fix map #2 ........... 0.0148 ........ 0.0180 ...... 0.0156 ........ 0.0179
fix map #3 ................ I ............. I ........... F ............. I
fix map #4 ........... 0.0252 ........ 0.0201 ...... 0.0214 ........ 0.0167
16-bit map #1 ........ 0.1027 ........ 0.0836 ...... 0.0388 ........ 0.0510
16-bit map #2 ............. S ............. S ........... S ............. S
32-bit map ................ S ............. S ........... S ............. S
complex map .......... 0.1104 ........ 0.1010 ...... 0.0556 ........ 0.0602
fixext 1 .................. I ............. I ........... F ............. F
fixext 2 .................. I ............. I ........... F ............. F
fixext 4 .................. I ............. I ........... F ............. F
fixext 8 .................. I ............. I ........... F ............. F
fixext 16 ................. I ............. I ........... F ............. F
8-bit ext ................. I ............. I ........... F ............. F
16-bit ext ................ I ............. I ........... F ............. F
32-bit ext ................ I ............. I ........... F ............. F
32-bit timestamp #1 ....... I ............. I ........... F ............. F
32-bit timestamp #2 ....... I ............. I ........... F ............. F
64-bit timestamp #1 ....... I ............. I ........... F ............. F
64-bit timestamp #2 ....... I ............. I ........... F ............. F
64-bit timestamp #3 ....... I ............. I ........... F ............. F
96-bit timestamp #1 ....... I ............. I ........... F ............. F
96-bit timestamp #2 ....... I ............. I ........... F ............. F
96-bit timestamp #3 ....... I ............. I ........... F ............. F
===========================================================================
Total 0.9642 1.0909 0.8224 0.7213
Skipped 4 4 4 4
Failed 0 0 24 17
Ignored 24 24 0 7
Note that the msgpack extension (v2.1.2) doesn't support ext, bin and UTF-8 str types.
The library is released under the MIT License. See the bundled LICENSE file for details.
Author: rybakit
Source Code: https://github.com/rybakit/msgpack.php
License: MIT License
1650636000
Port of deeplearning4j to clojure
Contact info
If you have any questions,
NOT YET RELEASED TO CLOJARS
If using Maven add the following repository definition to your pom.xml:
<repository>
<id>clojars.org</id>
<url>http://clojars.org/repo</url>
</repository>
With Leiningen:
n/a
With Maven:
n/a
<dependency>
<groupId>_</groupId>
<artifactId>_</artifactId>
<version>_</version>
</dependency>
All functions for creating dl4j objects return code by default
API functions return code when all args are provided as code
API functions return the value of calling the wrapped method when args are provided as a mixture of objects and code or just objects
The tests are there to help clarify behavior, if you are unsure of how to use a fn, search the tests
(ns my.ns
(:require [dl4clj.nn.conf.builders.layers :as l]))
;; as code (the default)
(l/dense-layer-builder
:activation-fn :relu
:learning-rate 0.006
:weight-init :xavier
:layer-name "example layer"
:n-in 10
:n-out 1)
;; =>
(doto
(org.deeplearning4j.nn.conf.layers.DenseLayer$Builder.)
(.nOut 1)
(.activation (dl4clj.constants/value-of {:activation-fn :relu}))
(.weightInit (dl4clj.constants/value-of {:weight-init :xavier}))
(.nIn 10)
(.name "example layer")
(.learningRate 0.006))
;; as an object
(l/dense-layer-builder
:activation-fn :relu
:learning-rate 0.006
:weight-init :xavier
:layer-name "example layer"
:n-in 10
:n-out 1
:as-code? false)
;; =>
#object[org.deeplearning4j.nn.conf.layers.DenseLayer 0x69d7d160 "DenseLayer(super=FeedForwardLayer(super=Layer(layerName=example layer, activationFn=relu, weightInit=XAVIER, biasInit=NaN, dist=null, learningRate=0.006, biasLearningRate=NaN, learningRateSchedule=null, momentum=NaN, momentumSchedule=null, l1=NaN, l2=NaN, l1Bias=NaN, l2Bias=NaN, dropOut=NaN, updater=null, rho=NaN, epsilon=NaN, rmsDecay=NaN, adamMeanDecay=NaN, adamVarDecay=NaN, gradientNormalization=null, gradientNormalizationThreshold=NaN), nIn=10, nOut=1))"]
Loading data from a file (here its a csv)
(ns my.ns
(:require [dl4clj.datasets.input-splits :as s]
[dl4clj.datasets.record-readers :as rr]
[dl4clj.datasets.api.record-readers :refer :all]
[dl4clj.datasets.iterators :as ds-iter]
[dl4clj.datasets.api.iterators :refer :all]
[dl4clj.helpers :refer [data-from-iter]]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; file splits (convert the data to records)
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def poker-path "resources/poker-hand-training.csv")
;; this is not a complete dataset, it is just here to sever as an example
(def file-split (s/new-filesplit :path poker-path))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; record readers, (read the records created by the file split)
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def csv-rr (initialize-rr! :rr (rr/new-csv-record-reader :skip-n-lines 0 :delimiter ",")
:input-split file-split))
;; lets look at some data
(println (next-record! :rr csv-rr :as-code? false))
;; => #object[java.util.ArrayList 0x2473e02d [1, 10, 1, 11, 1, 13, 1, 12, 1, 1, 9]]
;; this is our first line from the csv
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; record readers dataset iterators (turn our writables into a dataset)
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def rr-ds-iter (ds-iter/new-record-reader-dataset-iterator
:record-reader csv-rr
:batch-size 1
:label-idx 10
:n-possible-labels 10))
;; we use our record reader created above
;; we want to see one example per dataset obj returned (:batch-size = 1)
;; we know our label is at the last index, so :label-idx = 10
;; there are 10 possible types of poker hands so :n-possible-labels = 10
;; you can also set :label-idx to -1 to use the last index no matter the size of the seq
(def other-rr-ds-iter (ds-iter/new-record-reader-dataset-iterator
:record-reader csv-rr
:batch-size 1
:label-idx -1
:n-possible-labels 10))
(str (next-example! :iter rr-ds-iter :as-code? false))
;; =>
;;===========INPUT===================
;;[1.00, 10.00, 1.00, 11.00, 1.00, 13.00, 1.00, 12.00, 1.00, 1.00]
;;=================OUTPUT==================
;;[0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 1.00]
;; and to show that :label-idx = -1 gives us the same output
(= (next-example! :iter rr-ds-iter :as-code? false)
(next-example! :iter other-rr-ds-iter :as-code? false)) ;; => true
(ns my.ns
(:require [nd4clj.linalg.factory.nd4j :refer [vec->indarray matrix->indarray
indarray-of-zeros indarray-of-ones
indarray-of-rand vec-or-matrix->indarray]]
[dl4clj.datasets.new-datasets :refer [new-ds]]
[dl4clj.datasets.api.datasets :refer [as-list]]
[dl4clj.datasets.iterators :refer [new-existing-dataset-iterator]]
[dl4clj.datasets.api.iterators :refer :all]
[dl4clj.datasets.pre-processors :as ds-pp]
[dl4clj.datasets.api.pre-processors :refer :all]
[dl4clj.core :as c]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; INDArray creation
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;TODO: consider defaulting to code
;; can create from a vector
(vec->indarray [1 2 3 4])
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x269df212 [1.00, 2.00, 3.00, 4.00]]
;; or from a matrix
(matrix->indarray [[1 2 3 4] [2 4 6 8]])
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x20aa7fe1
;; [[1.00, 2.00, 3.00, 4.00], [2.00, 4.00, 6.00, 8.00]]]
;; will fill in spareness with zeros
(matrix->indarray [[1 2 3 4] [2 4 6 8] [10 12]])
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x8b7796c
;;[[1.00, 2.00, 3.00, 4.00],
;; [2.00, 4.00, 6.00, 8.00],
;; [10.00, 12.00, 0.00, 0.00]]]
;; can create an indarray of all zeros with specified shape
;; defaults to :rows = 1 :columns = 1
(indarray-of-zeros :rows 3 :columns 2)
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x6f586a7e
;;[[0.00, 0.00],
;; [0.00, 0.00],
;; [0.00, 0.00]]]
(indarray-of-zeros) ;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0xe59ffec 0.00]
;; and if only one is supplied, will get a vector of specified length
(indarray-of-zeros :rows 2)
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x2899d974 [0.00, 0.00]]
(indarray-of-zeros :columns 2)
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0xa5b9782 [0.00, 0.00]]
;; same considerations/defaults for indarray-of-ones and indarray-of-rand
(indarray-of-ones :rows 2 :columns 3)
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x54f08662 [[1.00, 1.00, 1.00], [1.00, 1.00, 1.00]]]
(indarray-of-rand :rows 2 :columns 3)
;; all values are greater than 0 but less than 1
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x2f20293b [[0.85, 0.86, 0.13], [0.94, 0.04, 0.36]]]
;; vec-or-matrix->indarray is built into all functions which require INDArrays
;; so that you can use clojure data structures
;; but you still have the option of passing existing INDArrays
(def example-array (vec-or-matrix->indarray [1 2 3 4]))
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x5c44c71f [1.00, 2.00, 3.00, 4.00]]
(vec-or-matrix->indarray example-array)
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x607b03b0 [1.00, 2.00, 3.00, 4.00]]
(vec-or-matrix->indarray (indarray-of-rand :rows 2))
;; => #object[org.nd4j.linalg.cpu.nativecpu.NDArray 0x49143b08 [0.76, 0.92]]
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; data-set creation
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def ds-with-single-example (new-ds :input [1 2 3 4]
:output [0.0 1.0 0.0]))
(as-list :ds ds-with-single-example :as-code? false)
;; =>
;; #object[java.util.ArrayList 0x5d703d12
;;[===========INPUT===================
;;[1.00, 2.00, 3.00, 4.00]
;;=================OUTPUT==================
;;[0.00, 1.00, 0.00]]]
(def ds-with-multiple-examples (new-ds
:input [[1 2 3 4] [2 4 6 8]]
:output [[0.0 1.0 0.0] [0.0 0.0 1.0]]))
(as-list :ds ds-with-multiple-examples :as-code? false)
;; =>
;;#object[java.util.ArrayList 0x29c7a9e2
;;[===========INPUT===================
;;[1.00, 2.00, 3.00, 4.00]
;;=================OUTPUT==================
;;[0.00, 1.00, 0.00],
;;===========INPUT===================
;;[2.00, 4.00, 6.00, 8.00]
;;=================OUTPUT==================
;;[0.00, 0.00, 1.00]]]
;; we can create a dataset iterator from the code which creates datasets
;; and set the labels for our outputs (optional)
(def ds-with-multiple-examples
(new-ds
:input [[1 2 3 4] [2 4 6 8]]
:output [[0.0 1.0 0.0] [0.0 0.0 1.0]]))
;; iterator
(def training-rr-ds-iter
(new-existing-dataset-iterator
:dataset ds-with-multiple-examples
:labels ["foo" "baz" "foobaz"]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; data-set normalization
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; this gathers statistics on the dataset and normalizes the data
;; and applies the transformation to all dataset objects in the iterator
(def train-iter-normalized
(c/normalize-iter! :iter training-rr-ds-iter
:normalizer (ds-pp/new-standardize-normalization-ds-preprocessor)
:as-code? false))
;; above returns the normalized iterator
;; to get fit normalizer
(def the-normalizer
(get-pre-processor train-iter-normalized))
Creating a neural network configuration with singe and multiple layers
(ns my.ns
(:require [dl4clj.nn.conf.builders.layers :as l]
[dl4clj.nn.conf.builders.nn :as nn]
[dl4clj.nn.conf.distributions :as dist]
[dl4clj.nn.conf.input-pre-processor :as pp]
[dl4clj.nn.conf.step-fns :as s-fn]))
;; nn/builder has 3 types of args
;; 1) args which set network configuration params
;; 2) args which set default values for layers
;; 3) args which set multi layer network configuration params
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; single layer nn configuration
;; here we are setting network configuration
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(nn/builder :optimization-algo :stochastic-gradient-descent
:seed 123
:iterations 1
:minimize? true
:use-drop-connect? false
:lr-score-based-decay-rate 0.002
:regularization? false
:step-fn :default-step-fn
:layers {:dense-layer {:activation-fn :relu
:updater :adam
:adam-mean-decay 0.2
:adam-var-decay 0.1
:learning-rate 0.006
:weight-init :xavier
:layer-name "single layer model example"
:n-in 10
:n-out 20}})
;; there are several options within a nn-conf map which can be configuration maps
;; or calls to fns
;; It doesn't matter which option you choose and you don't have to stay consistent
;; the list of params which can be passed as config maps or fn calls will
;; be enumerated at a later date
(nn/builder :optimization-algo :stochastic-gradient-descent
:seed 123
:iterations 1
:minimize? true
:use-drop-connect? false
:lr-score-based-decay-rate 0.002
:regularization? false
:step-fn (s-fn/new-default-step-fn)
:build? true
;; dont need to specify layer order, theres only one
:layers (l/dense-layer-builder
:activation-fn :relu
:updater :adam
:adam-mean-decay 0.2
:adam-var-decay 0.1
:dist (dist/new-normal-distribution :mean 0 :std 1)
:learning-rate 0.006
:weight-init :xavier
:layer-name "single layer model example"
:n-in 10
:n-out 20))
;; these configurations are the same
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; multi-layer configuration
;; here we are also setting layer defaults
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; defaults will apply to layers which do not specify those value in their config
(nn/builder
:optimization-algo :stochastic-gradient-descent
:seed 123
:iterations 1
:minimize? true
:use-drop-connect? false
:lr-score-based-decay-rate 0.002
:regularization? false
:default-activation-fn :sigmoid
:default-weight-init :uniform
;; we need to specify the layer order
:layers {0 (l/activation-layer-builder
:activation-fn :relu
:updater :adam
:adam-mean-decay 0.2
:adam-var-decay 0.1
:learning-rate 0.006
:weight-init :xavier
:layer-name "example first layer"
:n-in 10
:n-out 20)
1 {:output-layer {:n-in 20
:n-out 2
:loss-fn :mse
:layer-name "example output layer"}}})
;; specifying multi-layer config params
(nn/builder
;; network args
:optimization-algo :stochastic-gradient-descent
:seed 123
:iterations 1
:minimize? true
:use-drop-connect? false
:lr-score-based-decay-rate 0.002
:regularization? false
;; layer defaults
:default-activation-fn :sigmoid
:default-weight-init :uniform
;; the layers
:layers {0 (l/activation-layer-builder
:activation-fn :relu
:updater :adam
:adam-mean-decay 0.2
:adam-var-decay 0.1
:learning-rate 0.006
:weight-init :xavier
:layer-name "example first layer"
:n-in 10
:n-out 20)
1 {:output-layer {:n-in 20
:n-out 2
:loss-fn :mse
:layer-name "example output layer"}}}
;; multi layer network args
:backprop? true
:backprop-type :standard
:pretrain? false
:input-pre-processors {0 (pp/new-zero-mean-pre-pre-processor)
1 {:unit-variance-processor {}}})
Multi Layer models
(ns my.ns
(:require [dl4clj.datasets.iterators :as iter]
[dl4clj.datasets.input-splits :as split]
[dl4clj.datasets.record-readers :as rr]
[dl4clj.optimize.listeners :as listener]
[dl4clj.nn.conf.builders.nn :as nn]
[dl4clj.nn.multilayer.multi-layer-network :as mln]
[dl4clj.nn.api.model :refer [init! set-listeners!]]
[dl4clj.nn.api.multi-layer-network :refer [evaluate-classification]]
[dl4clj.datasets.api.record-readers :refer [initialize-rr!]]
[dl4clj.eval.api.eval :refer [get-stats get-accuracy]]
[dl4clj.core :as c]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; nn-conf -> multi-layer-network
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def nn-conf
(nn/builder
;; network args
:optimization-algo :stochastic-gradient-descent
:seed 123 :iterations 1 :regularization? true
;; setting layer defaults
:default-activation-fn :relu :default-l2 7.5e-6
:default-weight-init :xavier :default-learning-rate 0.0015
:default-updater :nesterovs :default-momentum 0.98
;; setting layer configuration
:layers {0 {:dense-layer
{:layer-name "example first layer"
:n-in 784 :n-out 500}}
1 {:dense-layer
{:layer-name "example second layer"
:n-in 500 :n-out 100}}
2 {:output-layer
{:n-in 100 :n-out 10
;; layer specific params
:loss-fn :negativeloglikelihood
:activation-fn :softmax
:layer-name "example output layer"}}}
;; multi layer args
:backprop? true
:pretrain? false))
(def multi-layer-network (c/model-from-conf nn-conf))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; local cpu training with dl4j pre-built iterators
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; lets use the pre-built Mnist data set iterator
(def train-mnist-iter
(iter/new-mnist-data-set-iterator
:batch-size 64
:train? true
:seed 123))
(def test-mnist-iter
(iter/new-mnist-data-set-iterator
:batch-size 64
:train? false
:seed 123))
;; and lets set a listener so we can know how training is going
(def score-listener (listener/new-score-iteration-listener :print-every-n 5))
;; and attach it to our model
;; TODO: listeners are broken, look into log4j warnning
(def mln-with-listener (set-listeners! :model multi-layer-network
:listeners [score-listener]))
(def trained-mln (mln/train-mln-with-ds-iter! :mln mln-with-listener
:iter train-mnist-iter
:n-epochs 15
:as-code? false))
;; training happens because :as-code? = false
;; if it was true, we would still just have a data structure
;; we now have a trained model that has seen the training dataset 15 times
;; time to evaluate our model
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;;Create an evaluation object
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def eval-obj (evaluate-classification :mln trained-mln
:iter test-mnist-iter))
;; always remember that these objects are stateful, dont use the same eval-obj
;; to eval two different networks
;; we trained the model on a training dataset. We evaluate on a test set
(println (get-stats :evaler eval-obj))
;; this will print the stats to standard out for each feature/label pair
;;Examples labeled as 0 classified by model as 0: 968 times
;;Examples labeled as 0 classified by model as 1: 1 times
;;Examples labeled as 0 classified by model as 2: 1 times
;;Examples labeled as 0 classified by model as 3: 1 times
;;Examples labeled as 0 classified by model as 5: 1 times
;;Examples labeled as 0 classified by model as 6: 3 times
;;Examples labeled as 0 classified by model as 7: 1 times
;;Examples labeled as 0 classified by model as 8: 2 times
;;Examples labeled as 0 classified by model as 9: 2 times
;;Examples labeled as 1 classified by model as 1: 1126 times
;;Examples labeled as 1 classified by model as 2: 2 times
;;Examples labeled as 1 classified by model as 3: 1 times
;;Examples labeled as 1 classified by model as 5: 1 times
;;Examples labeled as 1 classified by model as 6: 2 times
;;Examples labeled as 1 classified by model as 7: 1 times
;;Examples labeled as 1 classified by model as 8: 2 times
;;Examples labeled as 2 classified by model as 0: 3 times
;;Examples labeled as 2 classified by model as 1: 2 times
;;Examples labeled as 2 classified by model as 2: 1006 times
;;Examples labeled as 2 classified by model as 3: 2 times
;;Examples labeled as 2 classified by model as 4: 3 times
;;Examples labeled as 2 classified by model as 6: 3 times
;;Examples labeled as 2 classified by model as 7: 7 times
;;Examples labeled as 2 classified by model as 8: 6 times
;;Examples labeled as 3 classified by model as 2: 4 times
;;Examples labeled as 3 classified by model as 3: 990 times
;;Examples labeled as 3 classified by model as 5: 3 times
;;Examples labeled as 3 classified by model as 7: 3 times
;;Examples labeled as 3 classified by model as 8: 3 times
;;Examples labeled as 3 classified by model as 9: 7 times
;;Examples labeled as 4 classified by model as 2: 2 times
;;Examples labeled as 4 classified by model as 3: 1 times
;;Examples labeled as 4 classified by model as 4: 967 times
;;Examples labeled as 4 classified by model as 6: 4 times
;;Examples labeled as 4 classified by model as 7: 1 times
;;Examples labeled as 4 classified by model as 9: 7 times
;;Examples labeled as 5 classified by model as 0: 2 times
;;Examples labeled as 5 classified by model as 3: 6 times
;;Examples labeled as 5 classified by model as 4: 1 times
;;Examples labeled as 5 classified by model as 5: 874 times
;;Examples labeled as 5 classified by model as 6: 3 times
;;Examples labeled as 5 classified by model as 7: 1 times
;;Examples labeled as 5 classified by model as 8: 3 times
;;Examples labeled as 5 classified by model as 9: 2 times
;;Examples labeled as 6 classified by model as 0: 4 times
;;Examples labeled as 6 classified by model as 1: 3 times
;;Examples labeled as 6 classified by model as 3: 2 times
;;Examples labeled as 6 classified by model as 4: 4 times
;;Examples labeled as 6 classified by model as 5: 4 times
;;Examples labeled as 6 classified by model as 6: 939 times
;;Examples labeled as 6 classified by model as 7: 1 times
;;Examples labeled as 6 classified by model as 8: 1 times
;;Examples labeled as 7 classified by model as 1: 7 times
;;Examples labeled as 7 classified by model as 2: 4 times
;;Examples labeled as 7 classified by model as 3: 3 times
;;Examples labeled as 7 classified by model as 7: 1005 times
;;Examples labeled as 7 classified by model as 8: 2 times
;;Examples labeled as 7 classified by model as 9: 7 times
;;Examples labeled as 8 classified by model as 0: 3 times
;;Examples labeled as 8 classified by model as 2: 3 times
;;Examples labeled as 8 classified by model as 3: 2 times
;;Examples labeled as 8 classified by model as 4: 4 times
;;Examples labeled as 8 classified by model as 5: 3 times
;;Examples labeled as 8 classified by model as 6: 2 times
;;Examples labeled as 8 classified by model as 7: 4 times
;;Examples labeled as 8 classified by model as 8: 947 times
;;Examples labeled as 8 classified by model as 9: 6 times
;;Examples labeled as 9 classified by model as 0: 2 times
;;Examples labeled as 9 classified by model as 1: 2 times
;;Examples labeled as 9 classified by model as 3: 4 times
;;Examples labeled as 9 classified by model as 4: 8 times
;;Examples labeled as 9 classified by model as 6: 1 times
;;Examples labeled as 9 classified by model as 7: 4 times
;;Examples labeled as 9 classified by model as 8: 2 times
;;Examples labeled as 9 classified by model as 9: 986 times
;;==========================Scores========================================
;; Accuracy: 0.9808
;; Precision: 0.9808
;; Recall: 0.9807
;; F1 Score: 0.9807
;;========================================================================
;; can get the stats that are printed via fns in the evaluation namespace
;; after running eval-model-whole-ds
(get-accuracy :evaler evaler-with-stats) ;; => 0.9808
Early Stopping (controlling training)
it is recommened you start here when designing models
using dl4clj.core
(ns my.ns
(:require [dl4clj.earlystopping.termination-conditions :refer :all]
[dl4clj.earlystopping.model-saver :refer [new-in-memory-saver]]
[dl4clj.nn.api.multi-layer-network :refer [evaluate-classification]]
[dl4clj.eval.api.eval :refer [get-stats]]
[dl4clj.nn.conf.builders.nn :as nn]
[dl4clj.datasets.iterators :as iter]
[dl4clj.core :as c]))
(def nn-conf
(nn/builder
;; network args
:optimization-algo :stochastic-gradient-descent
:seed 123
:iterations 1
:regularization? true
;; setting layer defaults
:default-activation-fn :relu
:default-l2 7.5e-6
:default-weight-init :xavier
:default-learning-rate 0.0015
:default-updater :nesterovs
:default-momentum 0.98
;; setting layer configuration
:layers {0 {:dense-layer
{:layer-name "example first layer"
:n-in 784 :n-out 500}}
1 {:dense-layer
{:layer-name "example second layer"
:n-in 500 :n-out 100}}
2 {:output-layer
{:n-in 100 :n-out 10
;; layer specific params
:loss-fn :negativeloglikelihood
:activation-fn :softmax
:layer-name "example output layer"}}}
;; multi layer args
:backprop? true
:pretrain? false))
(def train-iter
(iter/new-mnist-data-set-iterator
:batch-size 64
:train? true
:seed 123))
(def test-iter
(iter/new-mnist-data-set-iterator
:batch-size 64
:train? false
:seed 123))
(def invalid-score-condition (new-invalid-score-iteration-termination-condition))
(def max-score-condition (new-max-score-iteration-termination-condition
:max-score 20.0))
(def max-time-condition (new-max-time-iteration-termination-condition
:max-time-val 10
:max-time-unit :minutes))
(def score-doesnt-improve-condition (new-score-improvement-epoch-termination-condition
:max-n-epoch-no-improve 5))
(def target-score-condition (new-best-score-epoch-termination-condition
:best-expected-score 0.009))
(def max-number-epochs-condition (new-max-epochs-termination-condition :max-n 20))
(def in-mem-saver (new-in-memory-saver))
(def trained-mln
;; defaults to returning the model
(c/train-with-early-stopping
:nn-conf nn-conf
:training-iter train-mnist-iter
:testing-iter test-mnist-iter
:eval-every-n-epochs 1
:iteration-termination-conditions [invalid-score-condition
max-score-condition
max-time-condition]
:epoch-termination-conditions [score-doesnt-improve-condition
target-score-condition
max-number-epochs-condition]
:save-last-model? true
:model-saver in-mem-saver
:as-code? false))
(def model-evaler
(evaluate-classification :mln trained-mln :iter test-mnist-iter))
(println (get-stats :evaler model-evaler))
(ns my.ns
(:require [dl4clj.earlystopping.early-stopping-config :refer [new-early-stopping-config]]
[dl4clj.earlystopping.termination-conditions :refer :all]
[dl4clj.earlystopping.model-saver :refer [new-in-memory-saver new-local-file-model-saver]]
[dl4clj.earlystopping.score-calc :refer [new-ds-loss-calculator]]
[dl4clj.earlystopping.early-stopping-trainer :refer [new-early-stopping-trainer]]
[dl4clj.earlystopping.api.early-stopping-trainer :refer [fit-trainer!]]
[dl4clj.nn.conf.builders.nn :as nn]
[dl4clj.nn.multilayer.multi-layer-network :as mln]
[dl4clj.utils :refer [load-model!]]
[dl4clj.datasets.iterators :as iter]
[dl4clj.core :as c]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; start with our network config
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def nn-conf
(nn/builder
;; network args
:optimization-algo :stochastic-gradient-descent
:seed 123 :iterations 1 :regularization? true
;; setting layer defaults
:default-activation-fn :relu :default-l2 7.5e-6
:default-weight-init :xavier :default-learning-rate 0.0015
:default-updater :nesterovs :default-momentum 0.98
;; setting layer configuration
:layers {0 {:dense-layer
{:layer-name "example first layer"
:n-in 784 :n-out 500}}
1 {:dense-layer
{:layer-name "example second layer"
:n-in 500 :n-out 100}}
2 {:output-layer
{:n-in 100 :n-out 10
;; layer specific params
:loss-fn :negativeloglikelihood
:activation-fn :softmax
:layer-name "example output layer"}}}
;; multi layer args
:backprop? true
:pretrain? false))
(def mln (c/model-from-conf nn-conf))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; the training/testing data
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def train-iter
(iter/new-mnist-data-set-iterator
:batch-size 64
:train? true
:seed 123))
(def test-iter
(iter/new-mnist-data-set-iterator
:batch-size 64
:train? false
:seed 123))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; we are going to need termination conditions
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; these allow us to control when we exit training
;; this can be based off of iterations or epochs
;; iteration termination conditions
(def invalid-score-condition (new-invalid-score-iteration-termination-condition))
(def max-score-condition (new-max-score-iteration-termination-condition
:max-score 20.0))
(def max-time-condition (new-max-time-iteration-termination-condition
:max-time-val 10
:max-time-unit :minutes))
;; epoch termination conditions
(def score-doesnt-improve-condition (new-score-improvement-epoch-termination-condition
:max-n-epoch-no-improve 5))
(def target-score-condition (new-best-score-epoch-termination-condition :best-expected-score 0.009))
(def max-number-epochs-condition (new-max-epochs-termination-condition :max-n 20))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; we also need a way to save our model
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; can be in memory or to a local directory
(def in-mem-saver (new-in-memory-saver))
(def local-file-saver (new-local-file-model-saver :directory "resources/tmp/readme/"))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; set up your score calculator
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def score-calcer (new-ds-loss-calculator :iter test-iter
:average? true))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; create an early stopping configuration
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; termination conditions
;; a way to save our model
;; a way to calculate the score of our model on the dataset
(def early-stopping-conf
(new-early-stopping-config
:epoch-termination-conditions [score-doesnt-improve-condition
target-score-condition
max-number-epochs-condition]
:iteration-termination-conditions [invalid-score-condition
max-score-condition
max-time-condition]
:eval-every-n-epochs 5
:model-saver local-file-saver
:save-last-model? true
:score-calculator score-calcer))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; create an early stopping trainer from our data, model and early stopping conf
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def es-trainer (new-early-stopping-trainer :early-stopping-conf early-stopping-conf
:mln mln
:iter train-iter))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; fit and use our early stopping trainer
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def es-trainer-fitted (fit-trainer! es-trainer :as-code? false))
;; when the trainer terminates, you will see something like this
;;[nREPL-worker-24] BaseEarlyStoppingTrainer INFO Completed training epoch 14
;;[nREPL-worker-24] BaseEarlyStoppingTrainer INFO New best model: score = 0.005225599372851298,
;; epoch = 14 (previous: score = 0.018243224899038346, epoch = 7)
;;[nREPL-worker-24] BaseEarlyStoppingTrainer INFO Hit epoch termination condition at epoch 14.
;; Details: BestScoreEpochTerminationCondition(0.009)
;; and if we look at the es-trainer-fitted object we see
;;#object[org.deeplearning4j.earlystopping.EarlyStoppingResult 0x5ab74f27 EarlyStoppingResult
;;(terminationReason=EpochTerminationCondition,details=BestScoreEpochTerminationCondition(0.009),
;; bestModelEpoch=14,bestModelScore=0.005225599372851298,totalEpochs=15)]
;; and our model has been saved to /resources/tmp/readme/bestModel.bin
;; there we have our model config, model params and our updater state
;; we can then load this model to use it or continue refining it
(def loaded-model (load-model! :path "resources/tmp/readme/bestModel.bin"
:load-updater? true))
Transfer Learning (freezing layers)
;; TODO: need to write up examples
dl4j Spark usage
How it is done in dl4clj
(ns my.ns
(:require [dl4clj.nn.conf.builders.layers :as l]
[dl4clj.nn.conf.builders.nn :as nn]
[dl4clj.datasets.iterators :refer [new-iris-data-set-iterator]]
[dl4clj.eval.api.eval :refer [get-stats]]
[dl4clj.spark.masters.param-avg :as master]
[dl4clj.spark.data.java-rdd :refer [new-java-spark-context
java-rdd-from-iter]]
[dl4clj.spark.api.dl4j-multi-layer :refer [eval-classification-spark-mln
get-spark-context]]
[dl4clj.core :as c]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 1, create your model config
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def mln-conf
(nn/builder
:optimization-algo :stochastic-gradient-descent
:default-learning-rate 0.006
:layers {0 (l/dense-layer-builder :n-in 4 :n-out 2 :activation-fn :relu)
1 {:output-layer
{:loss-fn :negativeloglikelihood
:n-in 2 :n-out 3
:activation-fn :soft-max
:weight-init :xavier}}}
:backprop? true
:backprop-type :standard))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 2, training master
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def training-master
(master/new-parameter-averaging-training-master
:build? true
:rdd-n-examples 10
:n-workers 4
:averaging-freq 10
:batch-size-per-worker 2
:export-dir "resources/spark/master/"
:rdd-training-approach :direct
:repartition-data :always
:repartition-strategy :balanced
:seed 1234
:save-updater? true
:storage-level :none))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 3, spark context
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def your-spark-context
(new-java-spark-context :app-name "example app"))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 4, training data
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def iris-iter
(new-iris-data-set-iterator
:batch-size 1
:n-examples 5))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 5, spark mln
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def fitted-spark-mln
(c/train-with-spark :spark-context your-spark-context
:mln-conf mln-conf
:training-master training-master
:iter iris-iter
:n-epochs 1
:as-code? false))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 5, use spark context from spark-mln to create rdd
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; TODO: eliminate this step
(def our-rdd
(let [sc (get-spark-context fitted-spark-mln :as-code? false)]
(java-rdd-from-iter :spark-context sc
:iter iris-iter)))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 6, evaluation model and print stats (poor performance of model expected)
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def eval-obj
(eval-classification-spark-mln
:spark-mln fitted-spark-mln
:rdd our-rdd))
(println (get-stats :evaler eval-obj))
(ns my.ns
(:require [dl4clj.nn.conf.builders.layers :as l]
[dl4clj.nn.conf.builders.nn :as nn]
[dl4clj.datasets.iterators :refer [new-iris-data-set-iterator]]
[dl4clj.eval.api.eval :refer [get-stats]]
[dl4clj.spark.masters.param-avg :as master]
[dl4clj.spark.data.java-rdd :refer [new-java-spark-context java-rdd-from-iter]]
[dl4clj.spark.dl4j-multi-layer :as spark-mln]
[dl4clj.spark.api.dl4j-multi-layer :refer [fit-spark-mln!
eval-classification-spark-mln]]))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 1, create your model
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def mln-conf
(nn/builder
:optimization-algo :stochastic-gradient-descent
:default-learning-rate 0.006
:layers {0 (l/dense-layer-builder :n-in 4 :n-out 2 :activation-fn :relu)
1 {:output-layer
{:loss-fn :negativeloglikelihood
:n-in 2 :n-out 3
:activation-fn :soft-max
:weight-init :xavier}}}
:backprop? true
:as-code? false
:backprop-type :standard))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 2, create a training master
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; not all options specified, but most are
(def training-master
(master/new-parameter-averaging-training-master
:build? true
:rdd-n-examples 10
:n-workers 4
:averaging-freq 10
:batch-size-per-worker 2
:export-dir "resources/spark/master/"
:rdd-training-approach :direct
:repartition-data :always
:repartition-strategy :balanced
:seed 1234
:as-code? false
:save-updater? true
:storage-level :none))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 3, create a Spark Multi Layer Network
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def your-spark-context
(new-java-spark-context :app-name "example app" :as-code? false))
;; new-java-spark-context will turn an existing spark-configuration into a java spark context
;; or create a new java spark context with master set to "local[*]" and the app name
;; set to :app-name
(def spark-mln
(spark-mln/new-spark-multi-layer-network
:spark-context your-spark-context
:mln mln-conf
:training-master training-master
:as-code? false))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 4, load your data
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; one way is via a dataset-iterator
;; can make one directly from a dataset (iterator data-set)
;; see: nd4clj.linalg.dataset.api.data-set and nd4clj.linalg.dataset.data-set
;; we are going to use a pre-built one
(def iris-iter
(new-iris-data-set-iterator
:batch-size 1
:n-examples 5
:as-code? false))
;; now lets convert the data into a javaRDD
(def our-rdd
(java-rdd-from-iter :spark-context your-spark-context
:iter iris-iter))
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
;; Step 5, fit and evaluate the model
;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
(def fitted-spark-mln
(fit-spark-mln!
:spark-mln spark-mln
:rdd our-rdd
:n-epochs 1))
;; this fn also has the option to supply :path-to-data instead of :rdd
;; that path should point to a directory containing a number of dataset objects
(def eval-obj
(eval-classification-spark-mln
:spark-mln fitted-spark-mln
:rdd our-rdd))
;; we would want to have different testing and training rdd's but here we are using
;; the data we trained on
;; lets get the stats for how our model performed
(println (get-stats :evaler eval-obj))
Coming soon
Implement ComputationGraphs and the classes which use them
NLP
Parallelism
TSNE
UI
Author: yetanalytics
Source Code: https://github.com/yetanalytics/dl4clj
License: BSD-2-Clause License
1591611780
How can I find the correct ulimit values for a user account or process on Linux systems?
For proper operation, we must ensure that the correct ulimit values set after installing various software. The Linux system provides means of restricting the number of resources that can be used. Limits set for each Linux user account. However, system limits are applied separately to each process that is running for that user too. For example, if certain thresholds are too low, the system might not be able to server web pages using Nginx/Apache or PHP/Python app. System resource limits viewed or set with the NA command. Let us see how to use the ulimit that provides control over the resources available to the shell and processes.
#[object object] #[object object] #[object object] #[object object] #[object object] #[object object] #[object object] #[object object] #[object object] #[object object]
1670560264
Learn how to use Python arrays. Create arrays in Python using the array module. You'll see how to define them and the different methods commonly used for performing operations on them.
The artcile covers arrays that you create by importing the array module
. We won't cover NumPy arrays here.
Let's get started!
Arrays are a fundamental data structure, and an important part of most programming languages. In Python, they are containers which are able to store more than one item at the same time.
Specifically, they are an ordered collection of elements with every value being of the same data type. That is the most important thing to remember about Python arrays - the fact that they can only hold a sequence of multiple items that are of the same type.
Lists are one of the most common data structures in Python, and a core part of the language.
Lists and arrays behave similarly.
Just like arrays, lists are an ordered sequence of elements.
They are also mutable and not fixed in size, which means they can grow and shrink throughout the life of the program. Items can be added and removed, making them very flexible to work with.
However, lists and arrays are not the same thing.
Lists store items that are of various data types. This means that a list can contain integers, floating point numbers, strings, or any other Python data type, at the same time. That is not the case with arrays.
As mentioned in the section above, arrays store only items that are of the same single data type. There are arrays that contain only integers, or only floating point numbers, or only any other Python data type you want to use.
Lists are built into the Python programming language, whereas arrays aren't. Arrays are not a built-in data structure, and therefore need to be imported via the array module
in order to be used.
Arrays of the array module
are a thin wrapper over C arrays, and are useful when you want to work with homogeneous data.
They are also more compact and take up less memory and space which makes them more size efficient compared to lists.
If you want to perform mathematical calculations, then you should use NumPy arrays by importing the NumPy package. Besides that, you should just use Python arrays when you really need to, as lists work in a similar way and are more flexible to work with.
In order to create Python arrays, you'll first have to import the array module
which contains all the necassary functions.
There are three ways you can import the array module
:
import array
at the top of the file. This includes the module array
. You would then go on to create an array using array.array()
.import array
#how you would create an array
array.array()
array.array()
all the time, you could use import array as arr
at the top of the file, instead of import array
alone. You would then create an array by typing arr.array()
. The arr
acts as an alias name, with the array constructor then immediately following it.import array as arr
#how you would create an array
arr.array()
from array import *
, with *
importing all the functionalities available. You would then create an array by writing the array()
constructor alone.from array import *
#how you would create an array
array()
Once you've imported the array module
, you can then go on to define a Python array.
The general syntax for creating an array looks like this:
variable_name = array(typecode,[elements])
Let's break it down:
variable_name
would be the name of the array.typecode
specifies what kind of elements would be stored in the array. Whether it would be an array of integers, an array of floats or an array of any other Python data type. Remember that all elements should be of the same data type.elements
that would be stored in the array, with each element being separated by a comma. You can also create an empty array by just writing variable_name = array(typecode)
alone, without any elements.Below is a typecode table, with the different typecodes that can be used with the different data types when defining Python arrays:
TYPECODE | C TYPE | PYTHON TYPE | SIZE |
---|---|---|---|
'b' | signed char | int | 1 |
'B' | unsigned char | int | 1 |
'u' | wchar_t | Unicode character | 2 |
'h' | signed short | int | 2 |
'H' | unsigned short | int | 2 |
'i' | signed int | int | 2 |
'I' | unsigned int | int | 2 |
'l' | signed long | int | 4 |
'L' | unsigned long | int | 4 |
'q' | signed long long | int | 8 |
'Q' | unsigned long long | int | 8 |
'f' | float | float | 4 |
'd' | double | float | 8 |
Tying everything together, here is an example of how you would define an array in Python:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers)
#output
#array('i', [10, 20, 30])
Let's break it down:
import array as arr
.numbers
array.arr.array()
because of import array as arr
.array()
constructor, we first included i
, for signed integer. Signed integer means that the array can include positive and negative values. Unsigned integer, with H
for example, would mean that no negative values are allowed.Keep in mind that if you tried to include values that were not of i
typecode, meaning they were not integer values, you would get an error:
import array as arr
numbers = arr.array('i',[10.0,20,30])
print(numbers)
#output
#Traceback (most recent call last):
# File "/Users/dionysialemonaki/python_articles/demo.py", line 14, in <module>
# numbers = arr.array('i',[10.0,20,30])
#TypeError: 'float' object cannot be interpreted as an integer
In the example above, I tried to include a floating point number in the array. I got an error because this is meant to be an integer array only.
Another way to create an array is the following:
from array import *
#an array of floating point values
numbers = array('d',[10.0,20.0,30.0])
print(numbers)
#output
#array('d', [10.0, 20.0, 30.0])
The example above imported the array module
via from array import *
and created an array numbers
of float data type. This means that it holds only floating point numbers, which is specified with the 'd'
typecode.
To find out the exact number of elements contained in an array, use the built-in len()
method.
It will return the integer number that is equal to the total number of elements in the array you specify.
import array as arr
numbers = arr.array('i',[10,20,30])
print(len(numbers))
#output
# 3
In the example above, the array contained three elements – 10, 20, 30
– so the length of numbers
is 3
.
Each item in an array has a specific address. Individual items are accessed by referencing their index number.
Indexing in Python, and in all programming languages and computing in general, starts at 0
. It is important to remember that counting starts at 0
and not at 1
.
To access an element, you first write the name of the array followed by square brackets. Inside the square brackets you include the item's index number.
The general syntax would look something like this:
array_name[index_value_of_item]
Here is how you would access each individual element in an array:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers[0]) # gets the 1st element
print(numbers[1]) # gets the 2nd element
print(numbers[2]) # gets the 3rd element
#output
#10
#20
#30
Remember that the index value of the last element of an array is always one less than the length of the array. Where n
is the length of the array, n - 1
will be the index value of the last item.
Note that you can also access each individual element using negative indexing.
With negative indexing, the last element would have an index of -1
, the second to last element would have an index of -2
, and so on.
Here is how you would get each item in an array using that method:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers[-1]) #gets last item
print(numbers[-2]) #gets second to last item
print(numbers[-3]) #gets first item
#output
#30
#20
#10
You can find out an element's index number by using the index()
method.
You pass the value of the element being searched as the argument to the method, and the element's index number is returned.
import array as arr
numbers = arr.array('i',[10,20,30])
#search for the index of the value 10
print(numbers.index(10))
#output
#0
If there is more than one element with the same value, the index of the first instance of the value will be returned:
import array as arr
numbers = arr.array('i',[10,20,30,10,20,30])
#search for the index of the value 10
#will return the index number of the first instance of the value 10
print(numbers.index(10))
#output
#0
You've seen how to access each individual element in an array and print it out on its own.
You've also seen how to print the array, using the print()
method. That method gives the following result:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers)
#output
#array('i', [10, 20, 30])
What if you want to print each value one by one?
This is where a loop comes in handy. You can loop through the array and print out each value, one-by-one, with each loop iteration.
For this you can use a simple for
loop:
import array as arr
numbers = arr.array('i',[10,20,30])
for number in numbers:
print(number)
#output
#10
#20
#30
You could also use the range()
function, and pass the len()
method as its parameter. This would give the same result as above:
import array as arr
values = arr.array('i',[10,20,30])
#prints each individual value in the array
for value in range(len(values)):
print(values[value])
#output
#10
#20
#30
To access a specific range of values inside the array, use the slicing operator, which is a colon :
.
When using the slicing operator and you only include one value, the counting starts from 0
by default. It gets the first item, and goes up to but not including the index number you specify.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#get the values 10 and 20 only
print(numbers[:2]) #first to second position
#output
#array('i', [10, 20])
When you pass two numbers as arguments, you specify a range of numbers. In this case, the counting starts at the position of the first number in the range, and up to but not including the second one:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#get the values 20 and 30 only
print(numbers[1:3]) #second to third position
#output
#rray('i', [20, 30])
Arrays are mutable, which means they are changeable. You can change the value of the different items, add new ones, or remove any you don't want in your program anymore.
Let's see some of the most commonly used methods which are used for performing operations on arrays.
You can change the value of a specific element by speficying its position and assigning it a new value:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#change the first element
#change it from having a value of 10 to having a value of 40
numbers[0] = 40
print(numbers)
#output
#array('i', [40, 20, 30])
To add one single value at the end of an array, use the append()
method:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integer 40 to the end of numbers
numbers.append(40)
print(numbers)
#output
#array('i', [10, 20, 30, 40])
Be aware that the new item you add needs to be the same data type as the rest of the items in the array.
Look what happens when I try to add a float to an array of integers:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integer 40 to the end of numbers
numbers.append(40.0)
print(numbers)
#output
#Traceback (most recent call last):
# File "/Users/dionysialemonaki/python_articles/demo.py", line 19, in <module>
# numbers.append(40.0)
#TypeError: 'float' object cannot be interpreted as an integer
But what if you want to add more than one value to the end an array?
Use the extend()
method, which takes an iterable (such as a list of items) as an argument. Again, make sure that the new items are all the same data type.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integers 40,50,60 to the end of numbers
#The numbers need to be enclosed in square brackets
numbers.extend([40,50,60])
print(numbers)
#output
#array('i', [10, 20, 30, 40, 50, 60])
And what if you don't want to add an item to the end of an array? Use the insert()
method, to add an item at a specific position.
The insert()
function takes two arguments: the index number of the position the new element will be inserted, and the value of the new element.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integer 40 in the first position
#remember indexing starts at 0
numbers.insert(0,40)
print(numbers)
#output
#array('i', [40, 10, 20, 30])
To remove an element from an array, use the remove()
method and include the value as an argument to the method.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
numbers.remove(10)
print(numbers)
#output
#array('i', [20, 30])
With remove()
, only the first instance of the value you pass as an argument will be removed.
See what happens when there are more than one identical values:
import array as arr
#original array
numbers = arr.array('i',[10,20,30,10,20])
numbers.remove(10)
print(numbers)
#output
#array('i', [20, 30, 10, 20])
Only the first occurence of 10
is removed.
You can also use the pop()
method, and specify the position of the element to be removed:
import array as arr
#original array
numbers = arr.array('i',[10,20,30,10,20])
#remove the first instance of 10
numbers.pop(0)
print(numbers)
#output
#array('i', [20, 30, 10, 20])
And there you have it - you now know the basics of how to create arrays in Python using the array module
. Hopefully you found this guide helpful.
You'll start from the basics and learn in an interacitve and beginner-friendly way. You'll also build five projects at the end to put into practice and help reinforce what you learned.
Thanks for reading and happy coding!
Original article source at https://www.freecodecamp.org
#python
1666082925
This tutorialvideo on 'Arrays in Python' will help you establish a strong hold on all the fundamentals in python programming language. Below are the topics covered in this video:
1:15 What is an array?
2:53 Is python list same as an array?
3:48 How to create arrays in python?
7:19 Accessing array elements
9:59 Basic array operations
- 10:33 Finding the length of an array
- 11:44 Adding Elements
- 15:06 Removing elements
- 18:32 Array concatenation
- 20:59 Slicing
- 23:26 Looping
Python Array Tutorial – Define, Index, Methods
In this article, you'll learn how to use Python arrays. You'll see how to define them and the different methods commonly used for performing operations on them.
The artcile covers arrays that you create by importing the array module
. We won't cover NumPy arrays here.
Let's get started!
Arrays are a fundamental data structure, and an important part of most programming languages. In Python, they are containers which are able to store more than one item at the same time.
Specifically, they are an ordered collection of elements with every value being of the same data type. That is the most important thing to remember about Python arrays - the fact that they can only hold a sequence of multiple items that are of the same type.
Lists are one of the most common data structures in Python, and a core part of the language.
Lists and arrays behave similarly.
Just like arrays, lists are an ordered sequence of elements.
They are also mutable and not fixed in size, which means they can grow and shrink throughout the life of the program. Items can be added and removed, making them very flexible to work with.
However, lists and arrays are not the same thing.
Lists store items that are of various data types. This means that a list can contain integers, floating point numbers, strings, or any other Python data type, at the same time. That is not the case with arrays.
As mentioned in the section above, arrays store only items that are of the same single data type. There are arrays that contain only integers, or only floating point numbers, or only any other Python data type you want to use.
Lists are built into the Python programming language, whereas arrays aren't. Arrays are not a built-in data structure, and therefore need to be imported via the array module
in order to be used.
Arrays of the array module
are a thin wrapper over C arrays, and are useful when you want to work with homogeneous data.
They are also more compact and take up less memory and space which makes them more size efficient compared to lists.
If you want to perform mathematical calculations, then you should use NumPy arrays by importing the NumPy package. Besides that, you should just use Python arrays when you really need to, as lists work in a similar way and are more flexible to work with.
In order to create Python arrays, you'll first have to import the array module
which contains all the necassary functions.
There are three ways you can import the array module
:
import array
at the top of the file. This includes the module array
. You would then go on to create an array using array.array()
.import array
#how you would create an array
array.array()
array.array()
all the time, you could use import array as arr
at the top of the file, instead of import array
alone. You would then create an array by typing arr.array()
. The arr
acts as an alias name, with the array constructor then immediately following it.import array as arr
#how you would create an array
arr.array()
from array import *
, with *
importing all the functionalities available. You would then create an array by writing the array()
constructor alone.from array import *
#how you would create an array
array()
Once you've imported the array module
, you can then go on to define a Python array.
The general syntax for creating an array looks like this:
variable_name = array(typecode,[elements])
Let's break it down:
variable_name
would be the name of the array.typecode
specifies what kind of elements would be stored in the array. Whether it would be an array of integers, an array of floats or an array of any other Python data type. Remember that all elements should be of the same data type.elements
that would be stored in the array, with each element being separated by a comma. You can also create an empty array by just writing variable_name = array(typecode)
alone, without any elements.Below is a typecode table, with the different typecodes that can be used with the different data types when defining Python arrays:
TYPECODE | C TYPE | PYTHON TYPE | SIZE |
---|---|---|---|
'b' | signed char | int | 1 |
'B' | unsigned char | int | 1 |
'u' | wchar_t | Unicode character | 2 |
'h' | signed short | int | 2 |
'H' | unsigned short | int | 2 |
'i' | signed int | int | 2 |
'I' | unsigned int | int | 2 |
'l' | signed long | int | 4 |
'L' | unsigned long | int | 4 |
'q' | signed long long | int | 8 |
'Q' | unsigned long long | int | 8 |
'f' | float | float | 4 |
'd' | double | float | 8 |
Tying everything together, here is an example of how you would define an array in Python:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers)
#output
#array('i', [10, 20, 30])
Let's break it down:
import array as arr
.numbers
array.arr.array()
because of import array as arr
.array()
constructor, we first included i
, for signed integer. Signed integer means that the array can include positive and negative values. Unsigned integer, with H
for example, would mean that no negative values are allowed.Keep in mind that if you tried to include values that were not of i
typecode, meaning they were not integer values, you would get an error:
import array as arr
numbers = arr.array('i',[10.0,20,30])
print(numbers)
#output
#Traceback (most recent call last):
# File "/Users/dionysialemonaki/python_articles/demo.py", line 14, in <module>
# numbers = arr.array('i',[10.0,20,30])
#TypeError: 'float' object cannot be interpreted as an integer
In the example above, I tried to include a floating point number in the array. I got an error because this is meant to be an integer array only.
Another way to create an array is the following:
from array import *
#an array of floating point values
numbers = array('d',[10.0,20.0,30.0])
print(numbers)
#output
#array('d', [10.0, 20.0, 30.0])
The example above imported the array module
via from array import *
and created an array numbers
of float data type. This means that it holds only floating point numbers, which is specified with the 'd'
typecode.
To find out the exact number of elements contained in an array, use the built-in len()
method.
It will return the integer number that is equal to the total number of elements in the array you specify.
import array as arr
numbers = arr.array('i',[10,20,30])
print(len(numbers))
#output
# 3
In the example above, the array contained three elements – 10, 20, 30
– so the length of numbers
is 3
.
Each item in an array has a specific address. Individual items are accessed by referencing their index number.
Indexing in Python, and in all programming languages and computing in general, starts at 0
. It is important to remember that counting starts at 0
and not at 1
.
To access an element, you first write the name of the array followed by square brackets. Inside the square brackets you include the item's index number.
The general syntax would look something like this:
array_name[index_value_of_item]
Here is how you would access each individual element in an array:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers[0]) # gets the 1st element
print(numbers[1]) # gets the 2nd element
print(numbers[2]) # gets the 3rd element
#output
#10
#20
#30
Remember that the index value of the last element of an array is always one less than the length of the array. Where n
is the length of the array, n - 1
will be the index value of the last item.
Note that you can also access each individual element using negative indexing.
With negative indexing, the last element would have an index of -1
, the second to last element would have an index of -2
, and so on.
Here is how you would get each item in an array using that method:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers[-1]) #gets last item
print(numbers[-2]) #gets second to last item
print(numbers[-3]) #gets first item
#output
#30
#20
#10
You can find out an element's index number by using the index()
method.
You pass the value of the element being searched as the argument to the method, and the element's index number is returned.
import array as arr
numbers = arr.array('i',[10,20,30])
#search for the index of the value 10
print(numbers.index(10))
#output
#0
If there is more than one element with the same value, the index of the first instance of the value will be returned:
import array as arr
numbers = arr.array('i',[10,20,30,10,20,30])
#search for the index of the value 10
#will return the index number of the first instance of the value 10
print(numbers.index(10))
#output
#0
You've seen how to access each individual element in an array and print it out on its own.
You've also seen how to print the array, using the print()
method. That method gives the following result:
import array as arr
numbers = arr.array('i',[10,20,30])
print(numbers)
#output
#array('i', [10, 20, 30])
What if you want to print each value one by one?
This is where a loop comes in handy. You can loop through the array and print out each value, one-by-one, with each loop iteration.
For this you can use a simple for
loop:
import array as arr
numbers = arr.array('i',[10,20,30])
for number in numbers:
print(number)
#output
#10
#20
#30
You could also use the range()
function, and pass the len()
method as its parameter. This would give the same result as above:
import array as arr
values = arr.array('i',[10,20,30])
#prints each individual value in the array
for value in range(len(values)):
print(values[value])
#output
#10
#20
#30
To access a specific range of values inside the array, use the slicing operator, which is a colon :
.
When using the slicing operator and you only include one value, the counting starts from 0
by default. It gets the first item, and goes up to but not including the index number you specify.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#get the values 10 and 20 only
print(numbers[:2]) #first to second position
#output
#array('i', [10, 20])
When you pass two numbers as arguments, you specify a range of numbers. In this case, the counting starts at the position of the first number in the range, and up to but not including the second one:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#get the values 20 and 30 only
print(numbers[1:3]) #second to third position
#output
#rray('i', [20, 30])
Arrays are mutable, which means they are changeable. You can change the value of the different items, add new ones, or remove any you don't want in your program anymore.
Let's see some of the most commonly used methods which are used for performing operations on arrays.
You can change the value of a specific element by speficying its position and assigning it a new value:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#change the first element
#change it from having a value of 10 to having a value of 40
numbers[0] = 40
print(numbers)
#output
#array('i', [40, 20, 30])
To add one single value at the end of an array, use the append()
method:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integer 40 to the end of numbers
numbers.append(40)
print(numbers)
#output
#array('i', [10, 20, 30, 40])
Be aware that the new item you add needs to be the same data type as the rest of the items in the array.
Look what happens when I try to add a float to an array of integers:
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integer 40 to the end of numbers
numbers.append(40.0)
print(numbers)
#output
#Traceback (most recent call last):
# File "/Users/dionysialemonaki/python_articles/demo.py", line 19, in <module>
# numbers.append(40.0)
#TypeError: 'float' object cannot be interpreted as an integer
But what if you want to add more than one value to the end an array?
Use the extend()
method, which takes an iterable (such as a list of items) as an argument. Again, make sure that the new items are all the same data type.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integers 40,50,60 to the end of numbers
#The numbers need to be enclosed in square brackets
numbers.extend([40,50,60])
print(numbers)
#output
#array('i', [10, 20, 30, 40, 50, 60])
And what if you don't want to add an item to the end of an array? Use the insert()
method, to add an item at a specific position.
The insert()
function takes two arguments: the index number of the position the new element will be inserted, and the value of the new element.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
#add the integer 40 in the first position
#remember indexing starts at 0
numbers.insert(0,40)
print(numbers)
#output
#array('i', [40, 10, 20, 30])
To remove an element from an array, use the remove()
method and include the value as an argument to the method.
import array as arr
#original array
numbers = arr.array('i',[10,20,30])
numbers.remove(10)
print(numbers)
#output
#array('i', [20, 30])
With remove()
, only the first instance of the value you pass as an argument will be removed.
See what happens when there are more than one identical values:
import array as arr
#original array
numbers = arr.array('i',[10,20,30,10,20])
numbers.remove(10)
print(numbers)
#output
#array('i', [20, 30, 10, 20])
Only the first occurence of 10
is removed.
You can also use the pop()
method, and specify the position of the element to be removed:
import array as arr
#original array
numbers = arr.array('i',[10,20,30,10,20])
#remove the first instance of 10
numbers.pop(0)
print(numbers)
#output
#array('i', [20, 30, 10, 20])
And there you have it - you now know the basics of how to create arrays in Python using the array module
. Hopefully you found this guide helpful.
Thanks for reading and happy coding!
#python #programming