Julia Programming

Julia Programming

1665717240

CLBLAS.jl: CLBLAS integration for Julia

CLBLAS.jl

Build status:

AMD clBLAS bindings for Julia.

Installation notes

if the download of the binary fails on linux, you may also try to install clblas with sudo apt-get install libclblas-dev and then rerun Pkg.build("CLBLAS").

Current status

  • Low-level bindings
  • Partial implementation of high-level API similar to Base.LinAlg.BLAS

Example

using OpenCL
import OpenCL.cl.CLArray
import CLBLAS
const clblas = CLBLAS


clblas.setup()
device, ctx, queue = clblas.get_next_compute_context()
alpha = 1.0
beta = 0.0

hA = rand(5, 10)
hB = rand(10, 5)
A = CLArray(queue, hA)
B = CLArray(queue, hB)
C = cl.zeros(queue, 5, 5)

clblas.gemm!('N', 'N', alpha, A, B, beta, C)
hC = cl.to_host(C)
if isapprox(hC, hA * hB)
    info("Success!")
else
    error("Results diverged")
end

Caveats

  • Complex64/CL_float2 doesn't work by default. This is caused by some weird incompatibility between clang (default for Julia) and gcc (default for clBLAS), so the only way to fix it right now is to manually compile clBLAS using clang,

Download Details:

Author: JuliaGPU
Source Code: https://github.com/JuliaGPU/CLBLAS.jl 
License: Apache-2.0 license

#julia #integration 

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CLBLAS.jl: CLBLAS integration for Julia
Julia Programming

Julia Programming

1665717240

CLBLAS.jl: CLBLAS integration for Julia

CLBLAS.jl

Build status:

AMD clBLAS bindings for Julia.

Installation notes

if the download of the binary fails on linux, you may also try to install clblas with sudo apt-get install libclblas-dev and then rerun Pkg.build("CLBLAS").

Current status

  • Low-level bindings
  • Partial implementation of high-level API similar to Base.LinAlg.BLAS

Example

using OpenCL
import OpenCL.cl.CLArray
import CLBLAS
const clblas = CLBLAS


clblas.setup()
device, ctx, queue = clblas.get_next_compute_context()
alpha = 1.0
beta = 0.0

hA = rand(5, 10)
hB = rand(10, 5)
A = CLArray(queue, hA)
B = CLArray(queue, hB)
C = cl.zeros(queue, 5, 5)

clblas.gemm!('N', 'N', alpha, A, B, beta, C)
hC = cl.to_host(C)
if isapprox(hC, hA * hB)
    info("Success!")
else
    error("Results diverged")
end

Caveats

  • Complex64/CL_float2 doesn't work by default. This is caused by some weird incompatibility between clang (default for Julia) and gcc (default for clBLAS), so the only way to fix it right now is to manually compile clBLAS using clang,

Download Details:

Author: JuliaGPU
Source Code: https://github.com/JuliaGPU/CLBLAS.jl 
License: Apache-2.0 license

#julia #integration 

Julia Programming

Julia Programming

1661256480

Nintegration.jl: Multidimensional Numerical Integration In Pure Julia

NIntegration.jl 

This is library intended to provided multidimensional numerical integration routines in pure Julia

Status

For the time being this library can only perform integrals in three dimensions.

TODO

  •  Add rules for other dimensions
  •  Make sure it works properly with complex valued functions
  •  Parallelize
  •  Improve the error estimates (the Cuba library and consequently Cuba.jl seem to calculate tighter errors)

Installation

NIntegration.jl should work on Julia 1.0 and later versions and can be installed from a Julia session by running

julia> using Pkg
julia> Pkg.add(PackageSpec(url = "https://github.com/pabloferz/NIntegration.jl.git"))

Usage

Once installed, run

using NIntegration

To integrate a function f(x, y, z) on the hyperrectangle defined by xmin and xmax, just call

nintegrate(
    f::Function, xmin::NTuple{N}, xmax::NTuple{N};
    reltol = 1e-6, abstol = eps(), maxevals = 1000000
)

The above returns a tuple (I, E, n, R) of the calculated integral I, the estimated error E, the number of integrand evaluations n, and a list R of the subregions in which the integration domain was subdivided.

If you need to evaluate multiple functions (f₁, f₂, ...) on the same integration domain, you can evaluate the function f with more "features" and use its subregions list to estimate the integral for the rest of the functions in the list, e.g.

(I, E, n, R) = nintegrate(f, xmin, xmin)
I₁ = nintegrate(f₁, R)

Technical Algorithms and References

The integration algorithm is based on the one decribed in:

  • J. Berntsen, T. O. Espelid, and A. Genz, "An Adaptive Algorithm for the Approximate Calculation of Multiple Integrals," ACM Trans. Math. Soft., 17 (4), 437-451 (1991).

Acknowdlegments

The author expresses his gratitude to Professor Alan Genz for some useful pointers.

This work was financially supported by CONACYT through grant 354884.

Download Details:

Author: Pabloferz
Source Code: https://github.com/pabloferz/NIntegration.jl 
License: MIT license

#julia #integration 

Julia Programming

Julia Programming

1661167740

Taylorintegration.jl: ODE Integration using Taylor's Method, in Julia

TaylorIntegration.jl

ODE integration using Taylor's method in Julia.

Installation

TaylorIntegration.jl is a registered package, and is simply installed by running

pkg> add TaylorIntegration

Supporting and citing

This package is developed as part of academic research. If you would like to help supporting it, please star the repository as such metrics may help us secure funding. If you use this software, we would be grateful if you could cite our work as follows (Bibtex entry can be found here):

J.A. Pérez-Hernández and L. Benet
TaylorIntegration.jl: Taylor Integration in Julia
https://github.com/PerezHz/TaylorIntegration.jl
DOI:[10.5281/zenodo.2562352](https://doi.org/10.5281/zenodo.2562352)

Examples

Acknowledgments

We acknowledge financial support from DGAPA-PAPIIT grants IG-100616 and IG-100819.

Build status: Build status

Coverage: Coverage Status codecov

Documentation:

DOI (Zenodo): DOI

Authors

  • Jorge A. Pérez, Instituto de Ciencias Físicas, Universidad Nacional Autónoma de México (UNAM)
  • Luis Benet, Instituto de Ciencias Físicas, Universidad Nacional Autónoma de México (UNAM)

Comments, suggestions, and improvements are welcome and appreciated.

Download Details:

Author: PerezHz
Source Code: https://github.com/PerezHz/TaylorIntegration.jl 
License: View license

#julia #differentiators #integration 

Julia Programming

Julia Programming

1661244900

HCubature.jl: Pure-Julia Multidimensional H-adaptive integration

HCubature

The HCubature module is a pure-Julia implementation of multidimensional "h-adaptive" integration. That is, given an n-dimensional integral

n-dimensional integral

then hcubature(f, a, b) computes the integral, adaptively subdividing the integration volume into smaller and smaller pieces until convergence is achieved to the desired tolerance (specified by optional rtol and atol keyword arguments, described in more detail below.

Because hcubature is written purely in Julia, the integrand f(x) can return any vector-like object (technically, any type supporting +, -, * real, and norm: a Banach space). You can integrate real, complex, and matrix-valued integrands, for example.

Usage

Assuming you've installed the HCubature package (via Pkg.add) and loaded it with using HCubature, you can then use it by calling the hcubature function:

hcubature

hcubature(f, a, b; norm=norm, rtol=sqrt(eps), atol=0, maxevals=typemax(Int), initdiv=1)

This computes the n-dimensional integral of f(x), where n == length(a) == length(b), over the hypercube whose corners are given by the vectors (or tuples) a and b. That is, dimension x[i] is integrated from a[i] to b[i]. The return value of hcubature is a tuple (I, E) of the estimated integral I and an estimated error E.

f should be a function f(x) that takes an n-dimensional vector x and returns the integrand at x. The integrand can be any type that supports +, -, * real, and norm functions. For example, the integrand can be real or complex numbers, vectors, matrices, etcetera. (For performance, the StaticArrays package is recommended for use with vector/matrix-valued integrands.)

The integrand f(x) will be always be passed an SVector{n,T}, where SVector is an efficient vector type defined in the StaticArrays package and T is a floating-point type determined by promoting the endpoint a and b coordinates to a floating-point type. (Your integrand f should be type-stable: it should always return a value of the same type, given this type of x.)

The integrand will never be evaluated exactly at the boundaries of the integration volume. (So, for example, it is possible to have an integrand that blows up at the boundaries, as long as the integral is finite, though such singularities will slow convergence.)

The integration volume is adaptively subdivided, using a cubature rule due to Genz and Malik (1980), until the estimated error E satisfies E ≤ max(rtol*norm(I), atol), i.e. rtol and atol are the relative and absolute tolerances requested, respectively. It also stops if the number of f evaluations exceeds maxevals. If neither atol nor rtol are specified, the default rtol is the square root of the precision eps(T) of the coordinate type T described above. Initially, the volume is divided into initdiv segments along each dimension.

The error is estimated by norm(I - I′), where I′ is an alternative estimated integral (via an "embedded" lower-order cubature rule.) By default, the norm function used (for both this and the convergence test above) is norm, but you can pass an alternative norm by the norm keyword argument. (This is especially useful when f returns a vector of integrands with different scalings.)

hquadrature

hquadrature(f, a, b; norm=norm, rtol=sqrt(eps), atol=0, maxevals=typemax(Int), initdiv=1)

Compute the (1d) integral of f(x) from a to b. The return value of hcubature is a tuple (I, E) of the estimated integral I and an estimated error E.

The other parameters are the same as hcubature (above). hquadrature is just a convenience wrapper around hcubature so that you can work with scalar x, a, and b, rather than 1-component vectors.

Alternatively, for 1d integrals you can import the QuadGK module and call the quadgk function, which provides additional flexibility e.g. in choosing the order of the quadrature rule. (QuadGK is used internally anyway by HCubature to compute the quadrature rule.)

Algorithm

The algorithm of hcubature is based on the one described in:

Download Details:

Author: JuliaMath
Source Code: https://github.com/JuliaMath/HCubature.jl 
License: View license

#julia #integration #math 

Julia Programming

Julia Programming

1661237220

QuadGK.jl: Adaptive 1d Numerical Gauss–Kronrod integration In Julia

QuadGK.jl

This package provides support for one-dimensional numerical integration in Julia using adaptive Gauss-Kronrod quadrature. The code was originally part of Base Julia. It supports integration of arbitrary numeric types, including arbitrary precision (BigFloat), and even integration of arbitrary normed vector spaces (e.g. matrix-valued integrands).

The package provides three functions: quadgk, gauss, and kronrod. quadgk performs the integration, gauss computes Gaussian quadrature points and weights for integrating over the interval [a, b], and kronrod computes Kronrod points, weights, and embedded Gaussian quadrature weights for integrating over [-1, 1]. Typical usage looks like:

using QuadGK
integral, err = quadgk(x -> exp(-x^2), 0, 1, rtol=1e-8)

which computes the integral of exp(–x²) from x=0 to x=1 to a relative tolerance of 10⁻⁸, and returns the approximate integral = 0.746824132812427 and error estimate err = 7.887024366937112e-13 (which is actually smaller than the requested tolerance: convergence was very rapid because the integrand is smooth).

For more information, see the documentation.

In-place operations for array-valued integrands

For integrands whose values are small arrays whose length is known at compile-time, it is usually most efficient to modify your integrand to return an SVector from the StaticArrays.jl package.

However, for integrands that return large or variabley-length arrays, we also provide a function quadgk!(f!, result, a,b...) in order to exploit in-place operations where possible. The result argument is used to store the estimated integral I in-place, and the integrand function is now of the form f!(r, x) and should write f(x) in-place into the result array r.

Gaussian quadrature and arbitrary weight functions

If you are computing many similar integrals of smooth functions, you may not need an adaptive integration — with a little experimentation, you may be able to decide on an appropriate number N of integration points in advance, and re-use this for all of your integrals. In this case you can use x, w = gauss(N, a, b) to find the quadrature points x and weights w, so that sum(f.(x) .* w) is an N-point approximation to ∫f(x)dx from a to b.

For computing many integrands of similar functions with singularities, x, w = gauss(W, N, a, b) function allows you to pass a weight function W(x) as the first argument, so that sum(f.(x) .* w) is an N-point approximation to ∫W(x)f(x)dx from a to b. In this way, you can put all of the singularities etcetera into W and precompute an accurate quadrature rule as long as the remaining f(x) terms are smooth. For example,

using QuadGK
x, w = gauss(x -> exp(-x) / sqrt(x), 10, 0, -log(1e-10), rtol=1e-9)

computes the points and weights for performing ∫exp(-x)f(x)/√x dx integrals from 0 to -log(1e-10) ≈ 23, so that there is a 1/√x singularity in the integrand at x=0 and a rapid decay for increasing x. (The gauss function currently does not support infinite integration intervals, but for a rapidly decaying weight function you can approximate an infinite interval to any desired accuracy by a sufficiently broad interval, with a tradeoff in computational expense.) For example, with f(x) = sin(x), the exact answer is 0.570370556005742…. Using the points and weights above with sum(sin.(x) .* w), we obtain 0.5703706212868831, which is correct to 6–7 digits using only 10 f(x) evaluations. Obtaining similar accuracy for the same integral from quadgk requires nearly 300 function evaluations. However, the gauss function itself computes many (2N) numerical integrals of your weight function (multiplied by polynomials), so this is only more efficient if your f(x) is very expensive or if you need to compute a large number of integrals with the same W.

See the gauss documentation for more information. See also our example using a weight function interpolated from tabulated data.

Similar packages

The FastGaussQuadrature.jl package provides non-adaptive Gaussian quadrature variety of built-in weight functions — it is a good choice you need to go to very high orders N, e.g. to integrate rapidly oscillating functions, or use weight functions that incorporate some standard singularity in your integrand. QuadGK, on the other hand, keeps the order N of the quadrature rule fixed and improves accuracy by subdividing the integration domain, which can be better if fine resolution is required only in a part of your domain (e.g if your integrand has a sharp peak or singularity somewhere that is not known in advance).

For multidimensional integration, see the HCubature.jl, Cubature.jl, and Cuba.jl packages.

Documentation:

Download Details:

Author: JuliaMath
Source Code: https://github.com/JuliaMath/QuadGK.jl 
License: MIT license

#julia #integration #math