Specify Various Templates for Different Directories and Create Them

Gold Right

Specify various templates for different directories and create them with one click.

Reason

Usually there is something in the project directory in a particular format, code snippet, configuration, directory structure, etc... Copying or right-clicking a new file frequently doesn't make us any more productive, so maybe we can make right-clicking easier.

Demo

https://user-images.githubusercontent.com/32405058/173213637-e1d0ea89-ad7b-434f-8d6b-a7035282838c.mp4

installation

After Gold-Right is installed and reload VS Code, Gold-Right is automatically enabled

Usage

Specifies the template directory location, which can be specified under workspace configuration or user configuration

# Specify the templates folder in the root directory
{
 # Relative to the current workspace path
 "goldRight.templateDirectoryPath": "./templates"
 "goldRight.templateDirectoryPath": "templates"
 # An absolute path
 "goldRight.templateDirectoryPath": "/Users/user-name/Gold-Right-example/templates"
}

Create the configuration (config.json) file in the template directory

{
  "paths": [
 { 
   "directory": "src/pages",
   # Use the components/hooks templates for ”src/pages“
   "templates": ["components", "hooks"]
 },
 {
   "directory": "src/hooks",
   # Use the hooks template for ”src/hooks“
   "templates": ["hooks"]
 }
  ],
  "templatesConfig": [
 {
   # Define the configuration for the Components template
   "templateName": "components",
   "inputsVariables": [
     {
       # Define the "[COMPONENT_NAME]" variable, and open the prompt box to enter the variable content
       "key": "[COMPONENT_NAME]",
       # The title of prompt box.
       "title": "Please input component name.",
       # If the this field is empty, creation will stop.
       "required": true
     }
   ]
 },
 {
   # Define the configuration for the hooks template
   "templateName": "hooks",
   "inputsVariables": [
     {
       # Define the "[HOOKS_NAME]" variable, and open the prompt box to enter the variable content
       "key": "[HOOKS_NAME]",
       # The title of prompt box.
       "title": "Please input hooks name."
     }
   ]
 }
  ]
}

Create templates

The directory structure

./templates
├── components
|   |   # The directory name "[COMPONENT_NAME]" will be replaced with the input.
│   └── [COMPONENT_NAME]
│       ├── index.tsx
│       └── styles.css
├── config.json
└── hooks
|___|   # The directory name "[HOOKS_NAME]" will be replaced with the input.
    └── [HOOKS_NAME]
        └── index.ts

./templates/components/[COMPONENT_NAME]/index.tsx

import React from 'react';
import './styles.css';

export interface [COMPONENT_NAME]Props {

}

export const [COMPONENT_NAME]: React.FC<[COMPONENT_NAME]Props> = props => {
    return <div></div>
}

./templates/hooks/[HOOKS_NAME]/index.ts

import React from 'react'

export const [HOOKS_NAME] = () => {
  return React.useState()
}

Sponsors

---

Author: dohooo
Source code: https://github.com/dohooo/Gold-Right
License:  MIT license
#react #typescript

What is GEEK

Buddha Community

PyTumblr: A Python Tumblr API v2 Client

PyTumblr

Installation

Install via pip:

$ pip install pytumblr

Install from source:

$ git clone https://github.com/tumblr/pytumblr.git
$ cd pytumblr
$ python setup.py install

Usage

Create a client

A pytumblr.TumblrRestClient is the object you'll make all of your calls to the Tumblr API through. Creating one is this easy:

client = pytumblr.TumblrRestClient(
    '<consumer_key>',
    '<consumer_secret>',
    '<oauth_token>',
    '<oauth_secret>',
)

client.info() # Grabs the current user information

Two easy ways to get your credentials to are:

1. The built-in interactive_console.py tool (if you already have a consumer key & secret)
2. The Tumblr API console at https://api.tumblr.com/console
3. Get sample login code at https://api.tumblr.com/console/calls/user/info

Supported Methods

User Methods

client.info() # get information about the authenticating user
client.dashboard() # get the dashboard for the authenticating user
client.likes() # get the likes for the authenticating user
client.following() # get the blogs followed by the authenticating user

client.follow('codingjester.tumblr.com') # follow a blog
client.unfollow('codingjester.tumblr.com') # unfollow a blog

client.like(id, reblogkey) # like a post
client.unlike(id, reblogkey) # unlike a post

Blog Methods

client.blog_info(blogName) # get information about a blog
client.posts(blogName, **params) # get posts for a blog
client.avatar(blogName) # get the avatar for a blog
client.blog_likes(blogName) # get the likes on a blog
client.followers(blogName) # get the followers of a blog
client.blog_following(blogName) # get the publicly exposed blogs that [blogName] follows
client.queue(blogName) # get the queue for a given blog
client.submission(blogName) # get the submissions for a given blog

Post Methods

Creating posts

PyTumblr lets you create all of the various types that Tumblr supports. When using these types there are a few defaults that are able to be used with any post type.

The default supported types are described below.

• state - a string, the state of the post. Supported types are published, draft, queue, private
• tags - a list, a list of strings that you want tagged on the post. eg: ["testing", "magic", "1"]
• tweet - a string, the string of the customized tweet you want. eg: "Man I love my mega awesome post!"
• date - a string, the customized GMT that you want
• format - a string, the format that your post is in. Support types are html or markdown
• slug - a string, the slug for the url of the post you want

We'll show examples throughout of these default examples while showcasing all the specific post types.

Creating a photo post

Creating a photo post supports a bunch of different options plus the described default options * caption - a string, the user supplied caption * link - a string, the "click-through" url for the photo * source - a string, the url for the photo you want to use (use this or the data parameter) * data - a list or string, a list of filepaths or a single file path for multipart file upload

#Creates a photo post using a source URL
client.create_photo(blogName, state="published", tags=["testing", "ok"],
                    source="https://68.media.tumblr.com/b965fbb2e501610a29d80ffb6fb3e1ad/tumblr_n55vdeTse11rn1906o1_500.jpg")

#Creates a photo post using a local filepath
client.create_photo(blogName, state="queue", tags=["testing", "ok"],
                    tweet="Woah this is an incredible sweet post [URL]",
                    data="/Users/johnb/path/to/my/image.jpg")

#Creates a photoset post using several local filepaths
client.create_photo(blogName, state="draft", tags=["jb is cool"], format="markdown",
                    data=["/Users/johnb/path/to/my/image.jpg", "/Users/johnb/Pictures/kittens.jpg"],
                    caption="## Mega sweet kittens")

Creating a text post

Creating a text post supports the same options as default and just a two other parameters * title - a string, the optional title for the post. Supports markdown or html * body - a string, the body of the of the post. Supports markdown or html

#Creating a text post
client.create_text(blogName, state="published", slug="testing-text-posts", title="Testing", body="testing1 2 3 4")

Creating a quote post

Creating a quote post supports the same options as default and two other parameter * quote - a string, the full text of the qote. Supports markdown or html * source - a string, the cited source. HTML supported

#Creating a quote post
client.create_quote(blogName, state="queue", quote="I am the Walrus", source="Ringo")

Creating a link post

• title - a string, the title of post that you want. Supports HTML entities.
• url - a string, the url that you want to create a link post for.
• description - a string, the desciption of the link that you have

#Create a link post
client.create_link(blogName, title="I like to search things, you should too.", url="https://duckduckgo.com",
                   description="Search is pretty cool when a duck does it.")

Creating a chat post

Creating a chat post supports the same options as default and two other parameters * title - a string, the title of the chat post * conversation - a string, the text of the conversation/chat, with diablog labels (no html)

#Create a chat post
chat = """John: Testing can be fun!
Renee: Testing is tedious and so are you.
John: Aw.
"""
client.create_chat(blogName, title="Renee just doesn't understand.", conversation=chat, tags=["renee", "testing"])

Creating an audio post

Creating an audio post allows for all default options and a has 3 other parameters. The only thing to keep in mind while dealing with audio posts is to make sure that you use the external_url parameter or data. You cannot use both at the same time. * caption - a string, the caption for your post * external_url - a string, the url of the site that hosts the audio file * data - a string, the filepath of the audio file you want to upload to Tumblr

#Creating an audio file
client.create_audio(blogName, caption="Rock out.", data="/Users/johnb/Music/my/new/sweet/album.mp3")

#lets use soundcloud!
client.create_audio(blogName, caption="Mega rock out.", external_url="https://soundcloud.com/skrillex/sets/recess")

Creating a video post

Creating a video post allows for all default options and has three other options. Like the other post types, it has some restrictions. You cannot use the embed and data parameters at the same time. * caption - a string, the caption for your post * embed - a string, the HTML embed code for the video * data - a string, the path of the file you want to upload

#Creating an upload from YouTube
client.create_video(blogName, caption="Jon Snow. Mega ridiculous sword.",
                    embed="http://www.youtube.com/watch?v=40pUYLacrj4")

#Creating a video post from local file
client.create_video(blogName, caption="testing", data="/Users/johnb/testing/ok/blah.mov")

Editing a post

Updating a post requires you knowing what type a post you're updating. You'll be able to supply to the post any of the options given above for updates.

client.edit_post(blogName, id=post_id, type="text", title="Updated")
client.edit_post(blogName, id=post_id, type="photo", data="/Users/johnb/mega/awesome.jpg")

Reblogging a Post

Reblogging a post just requires knowing the post id and the reblog key, which is supplied in the JSON of any post object.

client.reblog(blogName, id=125356, reblog_key="reblog_key")

Deleting a post

Deleting just requires that you own the post and have the post id

client.delete_post(blogName, 123456) # Deletes your post :(

A note on tags: When passing tags, as params, please pass them as a list (not a comma-separated string):

client.create_text(blogName, tags=['hello', 'world'], ...)

Getting notes for a post

In order to get the notes for a post, you need to have the post id and the blog that it is on.

data = client.notes(blogName, id='123456')

The results include a timestamp you can use to make future calls.

data = client.notes(blogName, id='123456', before_timestamp=data["_links"]["next"]["query_params"]["before_timestamp"])

Tagged Methods

# get posts with a given tag
client.tagged(tag, **params)

Using the interactive console

This client comes with a nice interactive console to run you through the OAuth process, grab your tokens (and store them for future use).

You'll need pyyaml installed to run it, but then it's just:

$ python interactive-console.py

and away you go! Tokens are stored in ~/.tumblr and are also shared by other Tumblr API clients like the Ruby client.

Running tests

The tests (and coverage reports) are run with nose, like this:

python setup.py test

Author: tumblr
Source Code: https://github.com/tumblr/pytumblr
License: Apache-2.0 license

#python #api 

Exploring Mutable and Immutable in Python

In this Python article, let's learn about Mutable and Immutable in Python. 

Mutable and Immutable in Python

Mutable is a fancy way of saying that the internal state of the object is changed/mutated. So, the simplest definition is: An object whose internal state can be changed is mutable. On the other hand, immutable doesn’t allow any change in the object once it has been created.

Both of these states are integral to Python data structure. If you want to become more knowledgeable in the entire Python Data Structure, take this free course which covers multiple data structures in Python including tuple data structure which is immutable. You will also receive a certificate on completion which is sure to add value to your portfolio.

Mutable Definition

Mutable is when something is changeable or has the ability to change. In Python, ‘mutable’ is the ability of objects to change their values. These are often the objects that store a collection of data.

Immutable Definition

Immutable is the when no change is possible over time. In Python, if the value of an object cannot be changed over time, then it is known as immutable. Once created, the value of these objects is permanent.

List of Mutable and Immutable objects

Objects of built-in type that are mutable are:

• Lists
• Sets
• Dictionaries
• User-Defined Classes (It purely depends upon the user to define the characteristics) 

Objects of built-in type that are immutable are:

• Numbers (Integer, Rational, Float, Decimal, Complex & Booleans)
• Strings
• Tuples
• Frozen Sets
• User-Defined Classes (It purely depends upon the user to define the characteristics)

Object mutability is one of the characteristics that makes Python a dynamically typed language. Though Mutable and Immutable in Python is a very basic concept, it can at times be a little confusing due to the intransitive nature of immutability.

Objects in Python

In Python, everything is treated as an object. Every object has these three attributes:

• Identity – This refers to the address that the object refers to in the computer’s memory.
• Type – This refers to the kind of object that is created. For example- integer, list, string etc. 
• Value – This refers to the value stored by the object. For example – List=[1,2,3] would hold the numbers 1,2 and 3

While ID and Type cannot be changed once it’s created, values can be changed for Mutable objects.

Check out this free python certificate course to get started with Python.

Mutable Objects in Python

I believe, rather than diving deep into the theory aspects of mutable and immutable in Python, a simple code would be the best way to depict what it means in Python. Hence, let us discuss the below code step-by-step:

#Creating a list which contains name of Indian cities  

cities = [‘Delhi’, ‘Mumbai’, ‘Kolkata’]

# Printing the elements from the list cities, separated by a comma & space

for city in cities:
		print(city, end=’, ’)

Output [1]: Delhi, Mumbai, Kolkata

#Printing the location of the object created in the memory address in hexadecimal format

print(hex(id(cities)))

Output [2]: 0x1691d7de8c8

#Adding a new city to the list cities

cities.append(‘Chennai’)

#Printing the elements from the list cities, separated by a comma & space 

for city in cities:
	print(city, end=’, ’)

Output [3]: Delhi, Mumbai, Kolkata, Chennai

#Printing the location of the object created in the memory address in hexadecimal format

print(hex(id(cities)))

Output [4]: 0x1691d7de8c8

The above example shows us that we were able to change the internal state of the object ‘cities’ by adding one more city ‘Chennai’ to it, yet, the memory address of the object did not change. This confirms that we did not create a new object, rather, the same object was changed or mutated. Hence, we can say that the object which is a type of list with reference variable name ‘cities’ is a MUTABLE OBJECT.

Let us now discuss the term IMMUTABLE. Considering that we understood what mutable stands for, it is obvious that the definition of immutable will have ‘NOT’ included in it. Here is the simplest definition of immutable– An object whose internal state can NOT be changed is IMMUTABLE.

Again, if you try and concentrate on different error messages, you have encountered, thrown by the respective IDE; you use you would be able to identify the immutable objects in Python. For instance, consider the below code & associated error message with it, while trying to change the value of a Tuple at index 0. 

#Creating a Tuple with variable name ‘foo’

foo = (1, 2)

#Changing the index[0] value from 1 to 3

foo[0] = 3
	
TypeError: 'tuple' object does not support item assignment 

Immutable Objects in Python

Once again, a simple code would be the best way to depict what immutable stands for. Hence, let us discuss the below code step-by-step:

#Creating a Tuple which contains English name of weekdays

weekdays = ‘Sunday’, ‘Monday’, ‘Tuesday’, ‘Wednesday’, ‘Thursday’, ‘Friday’, ‘Saturday’

# Printing the elements of tuple weekdays

print(weekdays)

Output [1]:  (‘Sunday’, ‘Monday’, ‘Tuesday’, ‘Wednesday’, ‘Thursday’, ‘Friday’, ‘Saturday’)

#Printing the location of the object created in the memory address in hexadecimal format

print(hex(id(weekdays)))

Output [2]: 0x1691cc35090

#tuples are immutable, so you cannot add new elements, hence, using merge of tuples with the # + operator to add a new imaginary day in the tuple ‘weekdays’

weekdays  +=  ‘Pythonday’,

#Printing the elements of tuple weekdays

print(weekdays)

Output [3]: (‘Sunday’, ‘Monday’, ‘Tuesday’, ‘Wednesday’, ‘Thursday’, ‘Friday’, ‘Saturday’, ‘Pythonday’)

#Printing the location of the object created in the memory address in hexadecimal format

print(hex(id(weekdays)))

Output [4]: 0x1691cc8ad68

This above example shows that we were able to use the same variable name that is referencing an object which is a type of tuple with seven elements in it. However, the ID or the memory location of the old & new tuple is not the same. We were not able to change the internal state of the object ‘weekdays’. The Python program manager created a new object in the memory address and the variable name ‘weekdays’ started referencing the new object with eight elements in it.  Hence, we can say that the object which is a type of tuple with reference variable name ‘weekdays’ is an IMMUTABLE OBJECT.

Also Read: Understanding the Exploratory Data Analysis (EDA) in Python

Where can you use mutable and immutable objects:

Mutable objects can be used where you want to allow for any updates. For example, you have a list of employee names in your organizations, and that needs to be updated every time a new member is hired. You can create a mutable list, and it can be updated easily.

Immutability offers a lot of useful applications to different sensitive tasks we do in a network centred environment where we allow for parallel processing. By creating immutable objects, you seal the values and ensure that no threads can invoke overwrite/update to your data. This is also useful in situations where you would like to write a piece of code that cannot be modified. For example, a debug code that attempts to find the value of an immutable object.

Watch outs:  Non transitive nature of Immutability:

OK! Now we do understand what mutable & immutable objects in Python are. Let’s go ahead and discuss the combination of these two and explore the possibilities. Let’s discuss, as to how will it behave if you have an immutable object which contains the mutable object(s)? Or vice versa? Let us again use a code to understand this behaviour–

#creating a tuple (immutable object) which contains 2 lists(mutable) as it’s elements

#The elements (lists) contains the name, age & gender 

person = (['Ayaan', 5, 'Male'], ['Aaradhya', 8, 'Female'])

#printing the tuple

print(person)

Output [1]: (['Ayaan', 5, 'Male'], ['Aaradhya', 8, 'Female'])

#printing the location of the object created in the memory address in hexadecimal format

print(hex(id(person)))

Output [2]: 0x1691ef47f88

#Changing the age for the 1st element. Selecting 1st element of tuple by using indexing [0] then 2nd element of the list by using indexing [1] and assigning a new value for age as 4

person[0][1] = 4

#printing the updated tuple

print(person)

Output [3]: (['Ayaan', 4, 'Male'], ['Aaradhya', 8, 'Female'])

#printing the location of the object created in the memory address in hexadecimal format

print(hex(id(person)))

Output [4]: 0x1691ef47f88

In the above code, you can see that the object ‘person’ is immutable since it is a type of tuple. However, it has two lists as it’s elements, and we can change the state of lists (lists being mutable). So, here we did not change the object reference inside the Tuple, but the referenced object was mutated.

Also Read: Real-Time Object Detection Using TensorFlow

Same way, let’s explore how it will behave if you have a mutable object which contains an immutable object? Let us again use a code to understand the behaviour–

#creating a list (mutable object) which contains tuples(immutable) as it’s elements

list1 = [(1, 2, 3), (4, 5, 6)]

#printing the list

print(list1)

Output [1]: [(1, 2, 3), (4, 5, 6)]

#printing the location of the object created in the memory address in hexadecimal format

print(hex(id(list1)))

Output [2]: 0x1691d5b13c8	

#changing object reference at index 0

list1[0] = (7, 8, 9)

#printing the list

Output [3]: [(7, 8, 9), (4, 5, 6)]

#printing the location of the object created in the memory address in hexadecimal format

print(hex(id(list1)))

Output [4]: 0x1691d5b13c8

As an individual, it completely depends upon you and your requirements as to what kind of data structure you would like to create with a combination of mutable & immutable objects. I hope that this information will help you while deciding the type of object you would like to select going forward.

Before I end our discussion on IMMUTABILITY, allow me to use the word ‘CAVITE’ when we discuss the String and Integers. There is an exception, and you may see some surprising results while checking the truthiness for immutability. For instance:
#creating an object of integer type with value 10 and reference variable name ‘x’ 

x = 10
 

#printing the value of ‘x’

print(x)

Output [1]: 10

#Printing the location of the object created in the memory address in hexadecimal format

print(hex(id(x)))

Output [2]: 0x538fb560

#creating an object of integer type with value 10 and reference variable name ‘y’

y = 10

#printing the value of ‘y’

print(y)

Output [3]: 10

#Printing the location of the object created in the memory address in hexadecimal format

print(hex(id(y)))

Output [4]: 0x538fb560

As per our discussion and understanding, so far, the memory address for x & y should have been different, since, 10 is an instance of Integer class which is immutable. However, as shown in the above code, it has the same memory address. This is not something that we expected. It seems that what we have understood and discussed, has an exception as well.

Quick check – Python Data Structures

Immutability of Tuple

Tuples are immutable and hence cannot have any changes in them once they are created in Python. This is because they support the same sequence operations as strings. We all know that strings are immutable. The index operator will select an element from a tuple just like in a string. Hence, they are immutable.

Exceptions in immutability

Like all, there are exceptions in the immutability in python too. Not all immutable objects are really mutable. This will lead to a lot of doubts in your mind. Let us just take an example to understand this.

Consider a tuple ‘tup’.

Now, if we consider tuple tup = (‘GreatLearning’,[4,3,1,2]) ;

We see that the tuple has elements of different data types. The first element here is a string which as we all know is immutable in nature. The second element is a list which we all know is mutable. Now, we all know that the tuple itself is an immutable data type. It cannot change its contents. But, the list inside it can change its contents. So, the value of the Immutable objects cannot be changed but its constituent objects can. change its value.

FAQs

1. Difference between mutable vs immutable in Python?

Mutable Object	Immutable Object
State of the object can be modified after it is created.	State of the object can’t be modified once it is created.
They are not thread safe.	They are thread safe
Mutable classes are not final.	It is important to make the class final before creating an immutable object.

2. What are the mutable and immutable data types in Python?

• Some mutable data types in Python are:

list, dictionary, set, user-defined classes.

• Some immutable data types are: 

int, float, decimal, bool, string, tuple, range.

3. Are lists mutable in Python?

Lists in Python are mutable data types as the elements of the list can be modified, individual elements can be replaced, and the order of elements can be changed even after the list has been created.
(Examples related to lists have been discussed earlier in this blog.)

4. Why are tuples called immutable types?

Tuple and list data structures are very similar, but one big difference between the data types is that lists are mutable, whereas tuples are immutable. The reason for the tuple’s immutability is that once the elements are added to the tuple and the tuple has been created; it remains unchanged.

A programmer would always prefer building a code that can be reused instead of making the whole data object again. Still, even though tuples are immutable, like lists, they can contain any Python object, including mutable objects.

5. Are sets mutable in Python?

A set is an iterable unordered collection of data type which can be used to perform mathematical operations (like union, intersection, difference etc.). Every element in a set is unique and immutable, i.e. no duplicate values should be there, and the values can’t be changed. However, we can add or remove items from the set as the set itself is mutable.

6. Are strings mutable in Python?

Strings are not mutable in Python. Strings are a immutable data types which means that its value cannot be updated.

Join Great Learning Academy’s free online courses and upgrade your skills today.

---

Original article source at: https://www.mygreatlearning.com

#python 

Bokeh Plotting Backend for Pandas and GeoPandas

Pandas-Bokeh provides a Bokeh plotting backend for Pandas, GeoPandas and Pyspark DataFrames, similar to the already existing Visualization feature of Pandas. Importing the library adds a complementary plotting method plot_bokeh() on DataFrames and Series.

With Pandas-Bokeh, creating stunning, interactive, HTML-based visualization is as easy as calling:

df.plot_bokeh()

---

Pandas-Bokeh also provides native support as a Pandas Plotting backend for Pandas >= 0.25. When Pandas-Bokeh is installed, switchting the default Pandas plotting backend to Bokeh can be done via:

pd.set_option('plotting.backend', 'pandas_bokeh')

More details about the new Pandas backend can be found below.

---

Interactive Documentation

Please visit:

https://patrikhlobil.github.io/Pandas-Bokeh/

for an interactive version of the documentation below, where you can play with the dynamic Bokeh plots.

---

For more information have a look at the Examples below or at notebooks on the Github Repository of this project.

 

Installation

You can install Pandas-Bokeh from PyPI via pip

pip install pandas-bokeh

or conda:

conda install -c patrikhlobil pandas-bokeh

With the current release 0.5.5, Pandas-Bokeh officially supports Python 3.6 and newer. For more details, see Release Notes.

How To Use

Classical Use

The Pandas-Bokeh library should be imported after Pandas, GeoPandas and/or Pyspark. After the import, one should define the plotting output, which can be:

pandas_bokeh.output_notebook(): Embeds the Plots in the cell outputs of the notebook. Ideal when working in Jupyter Notebooks.

pandas_bokeh.output_file(filename): Exports the plot to the provided filename as an HTML.

For more details about the plotting outputs, see the reference here or the Bokeh documentation.

Notebook output (see also bokeh.io.output_notebook)

import pandas as pd import pandas_bokeh pandas_bokeh.output_notebook()

File output to "Interactive Plot.html" (see also bokeh.io.output_file)

import pandas as pd import pandas_bokeh pandas_bokeh.output_file("Interactive Plot.html")

Pandas-Bokeh as native Pandas plotting backend

For pandas >= 0.25, a plotting backend switch is natively supported. It can be achievied by calling:

import pandas as pd
pd.set_option('plotting.backend', 'pandas_bokeh')

Now, the plotting API is accessible for a Pandas DataFrame via:

df.plot(...)

All additional functionalities of Pandas-Bokeh are then accessible at pd.plotting. So, setting the output to notebook is:

pd.plotting.output_notebook()

or calling the grid layout functionality:

pd.plotting.plot_grid(...)

Note: Backwards compatibility is kept since there will still be the df.plot_bokeh(...) methods for a DataFrame.

---

Plot types

Supported plottypes are at the moment:

• Pandas & Pyspark DataFrames
  • lineplot
  • pointplot
  • stepplot
  • scatterplot
  • barplot
  • histogram
  • areaplot
  • pieplot
  • mapplot
• Geoplots (Point, Line, Polygon) with GeoPandas

Also, check out the complementary chapter Outputs, Formatting & Layouts about:

• Output options (how to get HTML representation of Bokeh plots)
• Number formats in Pandas-Bokeh (modify Hovertool number format, suppress scientific notation on axes)
• Dashboard layouts (How to layout multiple plots in rows, columns and grids)

---

Lineplot

Basic Lineplot

This simple lineplot in Pandas-Bokeh already contains various interactive elements:

• a pannable and zoomable (zoom in plotarea and zoom on axis) plot
• by clicking on the legend elements, one can hide and show the individual lines
• a Hovertool for the plotted lines

Consider the following simple example:

import numpy as np

np.random.seed(42)
df = pd.DataFrame({"Google": np.random.randn(1000)+0.2, 
                   "Apple": np.random.randn(1000)+0.17}, 
                   index=pd.date_range('1/1/2000', periods=1000))
df = df.cumsum()
df = df + 50
df.plot_bokeh(kind="line")       #equivalent to df.plot_bokeh.line()

Note, that similar to the regular pandas.DataFrame.plot method, there are also additional accessors to directly access the different plotting types like:

• df.plot_bokeh(kind="line", ...) → df.plot_bokeh.line(...)
• df.plot_bokeh(kind="bar", ...) → df.plot_bokeh.bar(...)
• df.plot_bokeh(kind="hist", ...) → df.plot_bokeh.hist(...)
• ...

Advanced Lineplot

There are various optional parameters to tune the plots, for example:

kind: Which kind of plot should be produced. Currently supported are: "line", "point", "scatter", "bar" and "histogram". In the near future many more will be implemented as horizontal barplot, boxplots, pie-charts, etc.

x: Name of the column to use for the horizontal x-axis. If the x parameter is not specified, the index is used for the x-values of the plot. Alternative, also an array of values can be passed that has the same number of elements as the DataFrame.

y: Name of column or list of names of columns to use for the vertical y-axis.

figsize: Choose width & height of the plot

title: Sets title of the plot

xlim/ylim: Set visibler range of plot for x- and y-axis (also works for datetime x-axis)

xlabel/ylabel: Set x- and y-labels

logx/logy: Set log-scale on x-/y-axis

xticks/yticks: Explicitly set the ticks on the axes

color: Defines a single color for a plot.

colormap: Can be used to specify multiple colors to plot. Can be either a list of colors or the name of a Bokeh color palette

hovertool: If True a Hovertool is active, else if False no Hovertool is drawn.

hovertool_string: If specified, this string will be used for the hovertool (@{column} will be replaced by the value of the column for the element the mouse hovers over, see also Bokeh documentation and here)

toolbar_location: Specify the position of the toolbar location (None, "above", "below", "left" or "right"). Default: "right"

zooming: Enables/Disables zooming. Default: True

panning: Enables/Disables panning. Default: True

fontsize_label/fontsize_ticks/fontsize_title/fontsize_legend: Set fontsize of labels, ticks, title or legend (int or string of form "15pt")

rangetool Enables a range tool scroller. Default False

kwargs**: Optional keyword arguments of bokeh.plotting.figure.line

Try them out to get a feeling for the effects. Let us consider now:

df.plot_bokeh.line(
    figsize=(800, 450),
    y="Apple",
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(0, 400),
    toolbar_location=None,
    colormap=["red", "blue"],
    hovertool_string=r"""<img
                        src='https://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Apple_logo_black.svg/170px-Apple_logo_black.svg.png' 
                        height="42" alt="@imgs" width="42"
                        style="float: left; margin: 0px 15px 15px 0px;"
                        border="2"></img> Apple 
                        
                        <h4> Stock Price: </h4> @{Apple}""",
    panning=False,
    zooming=False)

Lineplot with data points

For lineplots, as for many other plot-kinds, there are some special keyword arguments that only work for this plotting type. For lineplots, these are:

plot_data_points: Plot also the data points on the lines

plot_data_points_size: Determines the size of the data points

marker: Defines the point type (Default: "circle"). Possible values are: 'circle', 'square', 'triangle', 'asterisk', 'circle_x', 'square_x', 'inverted_triangle', 'x', 'circle_cross', 'square_cross', 'diamond', 'cross'

kwargs**: Optional keyword arguments of bokeh.plotting.figure.line```

Let us use this information to have another version of the same plot:

df.plot_bokeh.line(
    figsize=(800, 450),
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(100, 200),
    xlim=("2001-01-01", "2001-02-01"),
    colormap=["red", "blue"],
    plot_data_points=True,
    plot_data_points_size=10,
    marker="asterisk")

Lineplot with rangetool

ts = pd.Series(np.random.randn(1000), index=pd.date_range('1/1/2000', periods=1000))
df = pd.DataFrame(np.random.randn(1000, 4), index=ts.index, columns=list('ABCD'))
df = df.cumsum()

df.plot_bokeh(rangetool=True)

Pointplot

If you just wish to draw the date points for curves, the pointplot option is the right choice. It also accepts the kwargs of bokeh.plotting.figure.scatter like marker or size:

import numpy as np

x = np.arange(-3, 3, 0.1)
y2 = x**2
y3 = x**3
df = pd.DataFrame({"x": x, "Parabula": y2, "Cube": y3})
df.plot_bokeh.point(
    x="x",
    xticks=range(-3, 4),
    size=5,
    colormap=["#009933", "#ff3399"],
    title="Pointplot (Parabula vs. Cube)",
    marker="x")

Stepplot

With a similar API as the line- & pointplots, one can generate a stepplot. Additional keyword arguments for this plot type are passes to bokeh.plotting.figure.step, e.g. mode (before, after, center), see the following example

import numpy as np

x = np.arange(-3, 3, 1)
y2 = x**2
y3 = x**3
df = pd.DataFrame({"x": x, "Parabula": y2, "Cube": y3})
df.plot_bokeh.step(
    x="x",
    xticks=range(-1, 1),
    colormap=["#009933", "#ff3399"],
    title="Pointplot (Parabula vs. Cube)",
    figsize=(800,300),
    fontsize_title=30,
    fontsize_label=25,
    fontsize_ticks=15,
    fontsize_legend=5,
    )

df.plot_bokeh.step(
    x="x",
    xticks=range(-1, 1),
    colormap=["#009933", "#ff3399"],
    title="Pointplot (Parabula vs. Cube)",
    mode="after",
    figsize=(800,300)
    )

Note that the step-plot API of Bokeh does so far not support a hovertool functionality.

Scatterplot

A basic scatterplot can be created using the kind="scatter" option. For scatterplots, the x and y parameters have to be specified and the following optional keyword argument is allowed:

category: Determines the category column to use for coloring the scatter points

kwargs**: Optional keyword arguments of bokeh.plotting.figure.scatter

Note, that the pandas.DataFrame.plot_bokeh() method return per default a Bokeh figure, which can be embedded in Dashboard layouts with other figures and Bokeh objects (for more details about (sub)plot layouts and embedding the resulting Bokeh plots as HTML click here).

In the example below, we use the building grid layout support of Pandas-Bokeh to display both the DataFrame (using a Bokeh DataTable) and the resulting scatterplot:

# Load Iris Dataset:
df = pd.read_csv(
    r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/iris/iris.csv"
)
df = df.sample(frac=1)

# Create Bokeh-Table with DataFrame:
from bokeh.models.widgets import DataTable, TableColumn
from bokeh.models import ColumnDataSource

data_table = DataTable(
    columns=[TableColumn(field=Ci, title=Ci) for Ci in df.columns],
    source=ColumnDataSource(df),
    height=300,
)

# Create Scatterplot:
p_scatter = df.plot_bokeh.scatter(
    x="petal length (cm)",
    y="sepal width (cm)",
    category="species",
    title="Iris DataSet Visualization",
    show_figure=False,
)

# Combine Table and Scatterplot via grid layout:
pandas_bokeh.plot_grid([[data_table, p_scatter]], plot_width=400, plot_height=350)

 

A possible optional keyword parameters that can be passed to bokeh.plotting.figure.scatter is size. Below, we use the sepal length of the Iris data as reference for the size:

#Change one value to clearly see the effect of the size keyword
df.loc[13, "sepal length (cm)"] = 15

#Make scatterplot:
p_scatter = df.plot_bokeh.scatter(
    x="petal length (cm)",
    y="sepal width (cm)",
    category="species",
    title="Iris DataSet Visualization with Size Keyword",
    size="sepal length (cm)")

In this example you can see, that the additional dimension sepal length cannot be used to clearly differentiate between the virginica and versicolor species.

Barplot

The barplot API has no special keyword arguments, but accepts optional kwargs of bokeh.plotting.figure.vbar like alpha. It uses per default the index for the bar categories (however, also columns can be used as x-axis category using the x argument).

data = {
    'fruits':
    ['Apples', 'Pears', 'Nectarines', 'Plums', 'Grapes', 'Strawberries'],
    '2015': [2, 1, 4, 3, 2, 4],
    '2016': [5, 3, 3, 2, 4, 6],
    '2017': [3, 2, 4, 4, 5, 3]
}
df = pd.DataFrame(data).set_index("fruits")

p_bar = df.plot_bokeh.bar(
    ylabel="Price per Unit [€]", 
    title="Fruit prices per Year", 
    alpha=0.6)

Using the stacked keyword argument you also maked stacked barplots:

p_stacked_bar = df.plot_bokeh.bar(
    ylabel="Price per Unit [€]",
    title="Fruit prices per Year",
    stacked=True,
    alpha=0.6)

Also horizontal versions of the above barplot are supported with the keyword kind="barh" or the accessor plot_bokeh.barh. You can still specify a column of the DataFrame as the bar category via the x argument if you do not wish to use the index.

#Reset index, such that "fruits" is now a column of the DataFrame:
df.reset_index(inplace=True)

#Create horizontal bar (via kind keyword):
p_hbar = df.plot_bokeh(
    kind="barh",
    x="fruits",
    xlabel="Price per Unit [€]",
    title="Fruit prices per Year",
    alpha=0.6,
    legend = "bottom_right",
    show_figure=False)

#Create stacked horizontal bar (via barh accessor):
p_stacked_hbar = df.plot_bokeh.barh(
    x="fruits",
    stacked=True,
    xlabel="Price per Unit [€]",
    title="Fruit prices per Year",
    alpha=0.6,
    legend = "bottom_right",
    show_figure=False)

#Plot all barplot examples in a grid:
pandas_bokeh.plot_grid([[p_bar, p_stacked_bar],
                        [p_hbar, p_stacked_hbar]], 
                       plot_width=450)

Histogram

For drawing histograms (kind="hist"), Pandas-Bokeh has a lot of customization features. Optional keyword arguments for histogram plots are:

bins: Determines bins to use for the histogram. If bins is an int, it defines the number of equal-width bins in the given range (10, by default). If bins is a sequence, it defines the bin edges, including the rightmost edge, allowing for non-uniform bin widths. If bins is a string, it defines the method used to calculate the optimal bin width, as defined by histogram_bin_edges.

histogram_type: Either "sidebyside", "topontop" or "stacked". Default: "topontop"

stacked: Boolean that overrides the histogram_type as "stacked" if given. Default: False

kwargs**: Optional keyword arguments of bokeh.plotting.figure.quad

Below examples of the different histogram types:

import numpy as np

df_hist = pd.DataFrame({
    'a': np.random.randn(1000) + 1,
    'b': np.random.randn(1000),
    'c': np.random.randn(1000) - 1
    },
    columns=['a', 'b', 'c'])

#Top-on-Top Histogram (Default):
df_hist.plot_bokeh.hist(
    bins=np.linspace(-5, 5, 41),
    vertical_xlabel=True,
    hovertool=False,
    title="Normal distributions (Top-on-Top)",
    line_color="black")

#Side-by-Side Histogram (multiple bars share bin side-by-side) also accessible via
#kind="hist":
df_hist.plot_bokeh(
    kind="hist",
    bins=np.linspace(-5, 5, 41),
    histogram_type="sidebyside",
    vertical_xlabel=True,
    hovertool=False,
    title="Normal distributions (Side-by-Side)",
    line_color="black")

#Stacked histogram:
df_hist.plot_bokeh.hist(
    bins=np.linspace(-5, 5, 41),
    histogram_type="stacked",
    vertical_xlabel=True,
    hovertool=False,
    title="Normal distributions (Stacked)",
    line_color="black")

Further, advanced keyword arguments for histograms are:

• weights: A column of the DataFrame that is used as weight for the histogramm aggregation (see also numpy.histogram)
• normed: If True, histogram values are normed to 1 (sum of histogram values=1). It is also possible to pass an integer, e.g. normed=100 would result in a histogram with percentage y-axis (sum of histogram values=100). Default: False
• cumulative: If True, a cumulative histogram is shown. Default: False
• show_average: If True, the average of the histogram is also shown. Default: False

Their usage is shown in these examples:

p_hist = df_hist.plot_bokeh.hist(
    y=["a", "b"],
    bins=np.arange(-4, 6.5, 0.5),
    normed=100,
    vertical_xlabel=True,
    ylabel="Share[%]",
    title="Normal distributions (normed)",
    show_average=True,
    xlim=(-4, 6),
    ylim=(0, 30),
    show_figure=False)

p_hist_cum = df_hist.plot_bokeh.hist(
    y=["a", "b"],
    bins=np.arange(-4, 6.5, 0.5),
    normed=100,
    cumulative=True,
    vertical_xlabel=True,
    ylabel="Share[%]",
    title="Normal distributions (normed & cumulative)",
    show_figure=False)

pandas_bokeh.plot_grid([[p_hist, p_hist_cum]], plot_width=450, plot_height=300)

 

Areaplot

Areaplot (kind="area") can be either drawn on top of each other or stacked. The important parameters are:

stacked: If True, the areaplots are stacked. If False, plots are drawn on top of each other. Default: False

kwargs**: Optional keyword arguments of bokeh.plotting.figure.patch

Let us consider the energy consumption split by source that can be downloaded as DataFrame via:

df_energy = pd.read_csv(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/energy/energy.csv", 
parse_dates=["Year"])
df_energy.head()

Year	Oil	Gas	Coal	Nuclear Energy	Hydroelectricity	Other Renewable
1970-01-01	2291.5	826.7	1467.3	17.7	265.8	5.8
1971-01-01	2427.7	884.8	1459.2	24.9	276.4	6.3
1972-01-01	2613.9	933.7	1475.7	34.1	288.9	6.8
1973-01-01	2818.1	978.0	1519.6	45.9	292.5	7.3
1974-01-01	2777.3	1001.9	1520.9	59.6	321.1	7.7

Creating the Areaplot can be achieved via:

df_energy.plot_bokeh.area(
    x="Year",
    stacked=True,
    legend="top_left",
    colormap=["brown", "orange", "black", "grey", "blue", "green"],
    title="Worldwide energy consumption split by energy source",
    ylabel="Million tonnes oil equivalent",
    ylim=(0, 16000))

Note that the energy consumption of fossile energy is still increasing and renewable energy sources are still small in comparison 😢!!! However, when we norm the plot using the normed keyword, there is a clear trend towards renewable energies in the last decade:

df_energy.plot_bokeh.area(
    x="Year",
    stacked=True,
    normed=100,
    legend="bottom_left",
    colormap=["brown", "orange", "black", "grey", "blue", "green"],
    title="Worldwide energy consumption split by energy source",
    ylabel="Million tonnes oil equivalent")

Pieplot

For Pieplots, let us consider a dataset showing the results of all Bundestags elections in Germany since 2002:

df_pie = pd.read_csv(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/Bundestagswahl/Bundestagswahl.csv")
df_pie

Partei	2002	2005	2009	2013	2017
CDU/CSU	38.5	35.2	33.8	41.5	32.9
SPD	38.5	34.2	23.0	25.7	20.5
FDP	7.4	9.8	14.6	4.8	10.7
Grünen	8.6	8.1	10.7	8.4	8.9
Linke/PDS	4.0	8.7	11.9	8.6	9.2
AfD	0.0	0.0	0.0	0.0	12.6
Sonstige	3.0	4.0	6.0	11.0	5.0

We can create a Pieplot of the last election in 2017 by specifying the "Partei" (german for party) column as the x column and the "2017" column as the y column for values:

df_pie.plot_bokeh.pie(
    x="Partei",
    y="2017",
    colormap=["blue", "red", "yellow", "green", "purple", "orange", "grey"],
    title="Results of German Bundestag Election 2017",
    )

When you pass several columns to the y parameter (not providing the y-parameter assumes you plot all columns), multiple nested pieplots will be shown in one plot:

df_pie.plot_bokeh.pie(
    x="Partei",
    colormap=["blue", "red", "yellow", "green", "purple", "orange", "grey"],
    title="Results of German Bundestag Elections [2002-2017]",
    line_color="grey")

Mapplot

The mapplot method of Pandas-Bokeh allows for plotting geographic points stored in a Pandas DataFrame on an interactive map. For more advanced Geoplots for line and polygon shapes have a look at the Geoplots examples for the GeoPandas API of Pandas-Bokeh.

For mapplots, only (latitude, longitude) pairs in geographic projection (WGS84) can be plotted on a map. The basic API has the following 2 base parameters:

• x: name of the longitude column of the DataFrame
• y: name of the latitude column of the DataFrame

The other optional keyword arguments are discussed in the section about the GeoPandas API, e.g. category for coloring the points.

Below an example of plotting all cities for more than 1 million inhabitants:

df_mapplot = pd.read_csv(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/populated%20places/populated_places.csv")
df_mapplot.head()

name	pop_max	latitude	longitude	size
Mesa	1085394	33.423915	-111.736084	1.085394
Sharjah	1103027	25.371383	55.406478	1.103027
Changwon	1081499	35.219102	128.583562	1.081499
Sheffield	1292900	53.366677	-1.499997	1.292900
Abbottabad	1183647	34.149503	73.199501	1.183647

df_mapplot["size"] = df_mapplot["pop_max"] / 1000000
df_mapplot.plot_bokeh.map(
    x="longitude",
    y="latitude",
    hovertool_string="""<h2> @{name} </h2> 
    
                        <h3> Population: @{pop_max} </h3>""",
    tile_provider="STAMEN_TERRAIN_RETINA",
    size="size", 
    figsize=(900, 600),
    title="World cities with more than 1.000.000 inhabitants")

 

Geoplots

Pandas-Bokeh also allows for interactive plotting of Maps using GeoPandas by providing a geopandas.GeoDataFrame.plot_bokeh() method. It allows to plot the following geodata on a map :

• Points/MultiPoints
• Lines/MultiLines
• Polygons/MultiPolygons

Note: t is not possible to mix up the objects types, i.e. a GeoDataFrame with Points and Lines is for example not allowed.

Les us start with a simple example using the "World Borders Dataset" . Let us first import all neccessary libraries and read the shapefile:

import geopandas as gpd
import pandas as pd
import pandas_bokeh
pandas_bokeh.output_notebook()

#Read in GeoJSON from URL:
df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")
df_states.head()

STATE_NAME	REGION	POPESTIMATE2010	POPESTIMATE2011	POPESTIMATE2012	POPESTIMATE2013	POPESTIMATE2014	POPESTIMATE2015	POPESTIMATE2016	POPESTIMATE2017	geometry
Hawaii	4	1363817	1378323	1392772	1408038	1417710	1426320	1428683	1427538	(POLYGON ((-160.0738033454681 22.0041773479577...
Washington	4	6741386	6819155	6890899	6963410	7046931	7152818	7280934	7405743	(POLYGON ((-122.4020153103835 48.2252163723779...
Montana	4	990507	996866	1003522	1011921	1019931	1028317	1038656	1050493	POLYGON ((-111.4754253002074 44.70216236909688...
Maine	1	1327568	1327968	1328101	1327975	1328903	1327787	1330232	1335907	(POLYGON ((-69.77727626137293 44.0741483685119...
North Dakota	2	674518	684830	701380	722908	738658	754859	755548	755393	POLYGON ((-98.73043728833767 45.93827137024809...

Plotting the data on a map is as simple as calling:

df_states.plot_bokeh(simplify_shapes=10000)

We also passed the optional parameter simplify_shapes (~meter) to improve plotting performance (for a reference see shapely.object.simplify). The above geolayer thus has an accuracy of about 10km.

Many keyword arguments like xlabel, ylabel, xlim, ylim, title, colormap, hovertool, zooming, panning, ... for costumizing the plot are also available for the geoplotting API and can be uses as in the examples shown above. There are however also many other options especially for plotting geodata:

• geometry_column: Specify the column that stores the geometry-information (default: "geometry")
• hovertool_columns: Specify column names, for which values should be shown in hovertool
• hovertool_string: If specified, this string will be used for the hovertool (@{column} will be replaced by the value of the column for the element the mouse hovers over, see also Bokeh documentation)
• colormap_uselog: If set True, the colormapper is using a logscale. Default: False
• colormap_range: Specify the value range of the colormapper via (min, max) tuple
• tile_provider: Define build-in tile provider for background maps. Possible values: None, 'CARTODBPOSITRON', 'CARTODBPOSITRON_RETINA', 'STAMEN_TERRAIN', 'STAMEN_TERRAIN_RETINA', 'STAMEN_TONER', 'STAMEN_TONER_BACKGROUND', 'STAMEN_TONER_LABELS'. Default: CARTODBPOSITRON_RETINA
• tile_provider_url: An arbitraty tile_provider_url of the form '/{Z}/{X}/{Y}*.png' can be passed to be used as background map.
• tile_attribution: String (also HTML accepted) for showing attribution for tile source in the lower right corner
• tile_alpha: Sets the alpha value of the background tile between [0, 1]. Default: 1

One of the most common usage of map plots are choropleth maps, where the color of a the objects is determined by the property of the object itself. There are 3 ways of drawing choropleth maps using Pandas-Bokeh, which are described below.

Categories

This is the simplest way. Just provide the category keyword for the selection of the property column:

• category: Specifies the column of the GeoDataFrame that should be used to draw a choropleth map
• show_colorbar: Whether or not to show a colorbar for categorical plots. Default: True

Let us now draw the regions as a choropleth plot using the category keyword (at the moment, only numerical columns are supported for choropleth plots):

df_states.plot_bokeh(
    figsize=(900, 600),
    simplify_shapes=5000,
    category="REGION",
    show_colorbar=False,
    colormap=["blue", "yellow", "green", "red"],
    hovertool_columns=["STATE_NAME", "REGION"],
    tile_provider="STAMEN_TERRAIN_RETINA")

When hovering over the states, the state-name and the region are shown as specified in the hovertool_columns argument.

 

Dropdown

By passing a list of column names of the GeoDataFrame as the dropdown keyword argument, a dropdown menu is shown above the map. This dropdown menu can be used to select the choropleth layer by the user. :

df_states["STATE_NAME_SMALL"] = df_states["STATE_NAME"].str.lower()

df_states.plot_bokeh(
    figsize=(900, 600),
    simplify_shapes=5000,
    dropdown=["POPESTIMATE2010", "POPESTIMATE2017"],
    colormap="Viridis",
    hovertool_string="""
                        <img
                        src="https://www.states101.com/img/flags/gif/small/@STATE_NAME_SMALL.gif" 
                        height="42" alt="@imgs" width="42"
                        style="float: left; margin: 0px 15px 15px 0px;"
                        border="2"></img>
                
                        <h2>  @STATE_NAME </h2>
                        <h3> 2010: @POPESTIMATE2010 </h3>
                        <h3> 2017: @POPESTIMATE2017 </h3>""",
    tile_provider_url=r"http://c.tile.stamen.com/watercolor/{Z}/{X}/{Y}.jpg",
    tile_attribution='Map tiles by <a href="http://stamen.com">Stamen Design</a>, under <a href="http://creativecommons.org/licenses/by/3.0">CC BY 3.0</a>. Data by <a href="http://openstreetmap.org">OpenStreetMap</a>, under <a href="http://www.openstreetmap.org/copyright">ODbL</a>.'
    )

Using hovertool_string, one can pass a string that can contain arbitrary HTML elements (including divs, images, ...) that is shown when hovering over the geographies (@{column} will be replaced by the value of the column for the element the mouse hovers over, see also Bokeh documentation).

Here, we also used an OSM tile server with watercolor style via tile_provider_url and added the attribution via tile_attribution.

Sliders

Another option for interactive choropleth maps is the slider implementation of Pandas-Bokeh. The possible keyword arguments are here:

• slider: By passing a list of column names of the GeoDataFrame, a slider can be used to . This dropdown menu can be used to select the choropleth layer by the user.
• slider_range: Pass a range (or numpy.arange) of numbers object to relate the sliders values with the slider columns. By passing range(0,10), the slider will have values [0, 1, 2, ..., 9], when passing numpy.arange(3,5,0.5), the slider will have values [3, 3.5, 4, 4.5]. Default: range(0, len(slider))
• slider_name: Specifies the title of the slider. Default is an empty string.

This can be used to display the change in population relative to the year 2010:

#Calculate change of population relative to 2010:
for i in range(8):
    df_states["Delta_Population_201%d"%i] = ((df_states["POPESTIMATE201%d"%i] / df_states["POPESTIMATE2010"]) -1 ) * 100

#Specify slider columns:
slider_columns = ["Delta_Population_201%d"%i for i in range(8)]

#Specify slider-range (Maps "Delta_Population_2010" -> 2010, 
#                           "Delta_Population_2011" -> 2011, ...):
slider_range = range(2010, 2018)

#Make slider plot:
df_states.plot_bokeh(
    figsize=(900, 600),
    simplify_shapes=5000,
    slider=slider_columns,
    slider_range=slider_range,
    slider_name="Year", 
    colormap="Inferno",
    hovertool_columns=["STATE_NAME"] + slider_columns,
    title="Change of Population [%]")

 

Plot multiple geolayers

If you wish to display multiple geolayers, you can pass the Bokeh figure of a Pandas-Bokeh plot via the figure keyword to the next plot_bokeh() call:

import geopandas as gpd
import pandas_bokeh
pandas_bokeh.output_notebook()

# Read in GeoJSONs from URL:
df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")
df_cities = gpd.read_file(
    r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/populated%20places/ne_10m_populated_places_simple_bigcities.geojson"
)
df_cities["size"] = df_cities.pop_max / 400000

#Plot shapes of US states (pass figure options to this initial plot):
figure = df_states.plot_bokeh(
    figsize=(800, 450),
    simplify_shapes=10000,
    show_figure=False,
    xlim=[-170, -80],
    ylim=[10, 70],
    category="REGION",
    colormap="Dark2",
    legend="States",
    show_colorbar=False,
)

#Plot cities as points on top of the US states layer by passing the figure:
df_cities.plot_bokeh(
    figure=figure,         # <== pass figure here!
    category="pop_max",
    colormap="Viridis",
    colormap_uselog=True,
    size="size",
    hovertool_string="""<h1>@name</h1>
                        <h3>Population: @pop_max </h3>""",
    marker="inverted_triangle",
    legend="Cities",
)

---

Point & Line plots:

Below, you can see an example that use Pandas-Bokeh to plot point data on a map. The plot shows all cities with a population larger than 1.000.000. For point plots, you can select the marker as keyword argument (since it is passed to bokeh.plotting.figure.scatter). Here an overview of all available marker types:

gdf = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/populated%20places/ne_10m_populated_places_simple_bigcities.geojson")
gdf["size"] = gdf.pop_max / 400000

gdf.plot_bokeh(
    category="pop_max",
    colormap="Viridis",
    colormap_uselog=True,
    size="size",
    hovertool_string="""<h1>@name</h1>
                        <h3>Population: @pop_max </h3>""",
    xlim=[-15, 35],
    ylim=[30,60],
    marker="inverted_triangle");

In a similar way, also GeoDataFrames with (multi)line shapes can be drawn using Pandas-Bokeh.

 

---

Colorbar formatting:

If you want to display the numerical labels on your colorbar with an alternative to the scientific format, you can pass in a one of the bokeh number string formats or an instance of one of the bokeh.models.formatters to the colorbar_tick_format argument in the geoplot

An example of using the string format argument:

df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")

df_states["STATE_NAME_SMALL"] = df_states["STATE_NAME"].str.lower()

# pass in a string format to colorbar_tick_format to display the ticks as 10m rather than 1e7
df_states.plot_bokeh(
    figsize=(900, 600),
    category="POPESTIMATE2017",
    simplify_shapes=5000,    
    colormap="Inferno",
    colormap_uselog=True,
    colorbar_tick_format="0.0a")

An example of using the bokeh PrintfTickFormatter:

df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")

df_states["STATE_NAME_SMALL"] = df_states["STATE_NAME"].str.lower()

for i in range(8):
    df_states["Delta_Population_201%d"%i] = ((df_states["POPESTIMATE201%d"%i] / df_states["POPESTIMATE2010"]) -1 ) * 100

# pass in a PrintfTickFormatter instance colorbar_tick_format to display the ticks with 2 decimal places  
df_states.plot_bokeh(
    figsize=(900, 600),
    category="Delta_Population_2017",
    simplify_shapes=5000,    
    colormap="Inferno",
    colorbar_tick_format=PrintfTickFormatter(format="%4.2f"))

Outputs, Formatting & Layouts

Output options

The pandas.DataFrame.plot_bokeh API has the following additional keyword arguments:

• show_figure: If True, the resulting figure is shown (either in the notebook or exported and shown as HTML file, see Basics. If False, None is returned. Default: True
• return_html: If True, the method call returns an HTML string that contains all Bokeh CSS&JS resources and the figure embedded in a div. This HTML representation of the plot can be used for embedding the plot in an HTML document. Default: False

If you have a Bokeh figure or layout, you can also use the pandas_bokeh.embedded_html function to generate an embeddable HTML representation of the plot. This can be included into any valid HTML (note that this is not possible directly with the HTML generated by the pandas_bokeh.output_file output option, because it includes an HTML header). Let us consider the following simple example:

#Import Pandas and Pandas-Bokeh (if you do not specify an output option, the standard is
#output_file):
import pandas as pd
import pandas_bokeh

#Create DataFrame to Plot:
import numpy as np
x = np.arange(-10, 10, 0.1)
sin = np.sin(x)
cos = np.cos(x)
tan = np.tan(x)
df = pd.DataFrame({"x": x, "sin(x)": sin, "cos(x)": cos, "tan(x)": tan})

#Make Bokeh plot from DataFrame using Pandas-Bokeh. Do not show the plot, but export
#it to an embeddable HTML string:
html_plot = df.plot_bokeh(
    kind="line",
    x="x",
    y=["sin(x)", "cos(x)", "tan(x)"],
    xticks=range(-20, 20),
    title="Trigonometric functions",
    show_figure=False,
    return_html=True,
    ylim=(-1.5, 1.5))

#Write some HTML and embed the HTML plot below it. For production use, please use
#Templates and the awesome Jinja library.
html = r"""
<script type="text/x-mathjax-config">
  MathJax.Hub.Config({tex2jax: {inlineMath: [['$','$'], ['\\(','\\)']]}});
</script>
<script type="text/javascript"
  src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>

<h1> Trigonometric functions </h1>

<p> The basic trigonometric functions are:</p>

<p>$ sin(x) $</p>
<p>$ cos(x) $</p>
<p>$ tan(x) = \frac{sin(x)}{cos(x)}$</p>

<p>Below is a plot that shows them</p>

""" + html_plot

#Export the HTML string to an external HTML file and show it:
with open("test.html" , "w") as f:
    f.write(html)
    
import webbrowser
webbrowser.open("test.html")

This code will open up a webbrowser and show the following page. As you can see, the interactive Bokeh plot is embedded nicely into the HTML layout. The return_html option is ideal for the use in a templating engine like Jinja.

Auto Scaling Plots

For single plots that have a number of x axis values or for larger monitors, you can auto scale the figure to the width of the entire jupyter cell by setting the sizing_mode parameter.

df = pd.DataFrame(np.random.rand(10, 4), columns=['a', 'b', 'c', 'd']) df.plot_bokeh(kind="bar", figsize=(500, 200), sizing_mode="scale_width")

The figsize parameter can be used to change the height and width as well as act as a scaling multiplier against the axis that is not being scaled.

 

Number formats

To change the formats of numbers in the hovertool, use the number_format keyword argument. For a documentation about the format to pass, have a look at the Bokeh documentation.Let us consider some examples for the number 3.141592653589793:

Format	Output
0	3
0.000	3.141
0.00 $	3.14 $

This number format will be applied to all numeric columns of the hovertool. If you want to make a very custom or complicated hovertool, you should probably use the hovertool_string keyword argument, see e.g. this example. Below, we use the number_format parameter to specify the "Stock Price" format to 2 decimal digits and an additional $ sign.

import numpy as np

#Lineplot:
np.random.seed(42)
df = pd.DataFrame({
    "Google": np.random.randn(1000) + 0.2,
    "Apple": np.random.randn(1000) + 0.17
},
                  index=pd.date_range('1/1/2000', periods=1000))
df = df.cumsum()
df = df + 50
df.plot_bokeh(
    kind="line",
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(0, 400),
    colormap=["red", "blue"],
    number_format="1.00 $")

Suppress scientific notation for axes

If you want to suppress the scientific notation for axes, you can use the disable_scientific_axes parameter, which accepts one of "x", "y", "xy":

df = pd.DataFrame({"Animal": ["Mouse", "Rabbit", "Dog", "Tiger", "Elefant", "Wale"],
                   "Weight [g]": [19, 3000, 40000, 200000, 6000000, 50000000]})
p_scientific = df.plot_bokeh(x="Animal", y="Weight [g]", show_figure=False)
p_non_scientific = df.plot_bokeh(x="Animal", y="Weight [g]", disable_scientific_axes="y", show_figure=False,)
pandas_bokeh.plot_grid([[p_scientific, p_non_scientific]], plot_width = 450)

 

Dashboard Layouts

As shown in the Scatterplot Example, combining plots with plots or other HTML elements is straighforward in Pandas-Bokeh due to the layout capabilities of Bokeh. The easiest way to generate a dashboard layout is using the pandas_bokeh.plot_grid method (which is an extension of bokeh.layouts.gridplot):

import pandas as pd
import numpy as np
import pandas_bokeh
pandas_bokeh.output_notebook()

#Barplot:
data = {
    'fruits':
    ['Apples', 'Pears', 'Nectarines', 'Plums', 'Grapes', 'Strawberries'],
    '2015': [2, 1, 4, 3, 2, 4],
    '2016': [5, 3, 3, 2, 4, 6],
    '2017': [3, 2, 4, 4, 5, 3]
}
df = pd.DataFrame(data).set_index("fruits")
p_bar = df.plot_bokeh(
    kind="bar",
    ylabel="Price per Unit [€]",
    title="Fruit prices per Year",
    show_figure=False)

#Lineplot:
np.random.seed(42)
df = pd.DataFrame({
    "Google": np.random.randn(1000) + 0.2,
    "Apple": np.random.randn(1000) + 0.17
},
                  index=pd.date_range('1/1/2000', periods=1000))
df = df.cumsum()
df = df + 50
p_line = df.plot_bokeh(
    kind="line",
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(0, 400),
    colormap=["red", "blue"],
    show_figure=False)

#Scatterplot:
from sklearn.datasets import load_iris
iris = load_iris()
df = pd.DataFrame(iris["data"])
df.columns = iris["feature_names"]
df["species"] = iris["target"]
df["species"] = df["species"].map(dict(zip(range(3), iris["target_names"])))
p_scatter = df.plot_bokeh(
    kind="scatter",
    x="petal length (cm)",
    y="sepal width (cm)",
    category="species",
    title="Iris DataSet Visualization",
    show_figure=False)

#Histogram:
df_hist = pd.DataFrame({
    'a': np.random.randn(1000) + 1,
    'b': np.random.randn(1000),
    'c': np.random.randn(1000) - 1
},
                       columns=['a', 'b', 'c'])

p_hist = df_hist.plot_bokeh(
    kind="hist",
    bins=np.arange(-6, 6.5, 0.5),
    vertical_xlabel=True,
    normed=100,
    hovertool=False,
    title="Normal distributions",
    show_figure=False)

#Make Dashboard with Grid Layout:
pandas_bokeh.plot_grid([[p_line, p_bar], 
                        [p_scatter, p_hist]], plot_width=450)

Using a combination of row and column elements (see also Bokeh Layouts) allow for a very easy general arrangement of elements. An alternative layout to the one above is:

p_line.plot_width = 900
p_hist.plot_width = 900

layout = pandas_bokeh.column(p_line,
                pandas_bokeh.row(p_scatter, p_bar),
                p_hist)

pandas_bokeh.show(layout)

 

---

 

 

Release Notes

Release Notes can be found here.

Contributing to Pandas-Bokeh

If you wish to contribute to the development of Pandas-Bokeh you can follow the instructions on the CONTRIBUTING.md.

 

Author: PatrikHlobil
Source Code: https://github.com/PatrikHlobil/Pandas-Bokeh 
License: MIT License

#machine-learning  #datavisualizations #python 

Pandas Bokeh: Bokeh Plotting Backend for Pandas and GeoPandas

Pandas-Bokeh provides a Bokeh plotting backend for Pandas, GeoPandas and Pyspark DataFrames, similar to the already existing Visualization feature of Pandas. Importing the library adds a complementary plotting method plot_bokeh() on DataFrames and Series.

With Pandas-Bokeh, creating stunning, interactive, HTML-based visualization is as easy as calling:

df.plot_bokeh()

Pandas-Bokeh also provides native support as a Pandas Plotting backend for Pandas >= 0.25. When Pandas-Bokeh is installed, switchting the default Pandas plotting backend to Bokeh can be done via:

pd.set_option('plotting.backend', 'pandas_bokeh')

More details about the new Pandas backend can be found below.

Interactive Documentation

Please visit:

https://patrikhlobil.github.io/Pandas-Bokeh/

for an interactive version of the documentation below, where you can play with the dynamic Bokeh plots.

For more information have a look at the Examples below or at notebooks on the Github Repository of this project.

Installation

You can install Pandas-Bokeh from PyPI via pip

pip install pandas-bokeh

or conda:

conda install -c patrikhlobil pandas-bokeh

With the current release 0.5.5, Pandas-Bokeh officially supports Python 3.6 and newer. For more details, see Release Notes.

How To Use

Classical Use

 

The Pandas-Bokeh library should be imported after Pandas, GeoPandas and/or Pyspark. After the import, one should define the plotting output, which can be:

• pandas_bokeh.output_notebook(): Embeds the Plots in the cell outputs of the notebook. Ideal when working in Jupyter Notebooks.
• pandas_bokeh.output_file(filename): Exports the plot to the provided filename as an HTML.

For more details about the plotting outputs, see the reference here or the Bokeh documentation.

Notebook output (see also bokeh.io.output_notebook)

import pandas as pd
import pandas_bokeh
pandas_bokeh.output_notebook()

File output to "Interactive Plot.html" (see also bokeh.io.output_file)

import pandas as pd
import pandas_bokeh
pandas_bokeh.output_file("Interactive Plot.html")

Pandas-Bokeh as native Pandas plotting backend

For pandas >= 0.25, a plotting backend switch is natively supported. It can be achievied by calling:

import pandas as pd
pd.set_option('plotting.backend', 'pandas_bokeh')

Now, the plotting API is accessible for a Pandas DataFrame via:

df.plot(...)

All additional functionalities of Pandas-Bokeh are then accessible at pd.plotting. So, setting the output to notebook is:

pd.plotting.output_notebook()

or calling the grid layout functionality:

pd.plotting.plot_grid(...)

Note: Backwards compatibility is kept since there will still be the df.plot_bokeh(...) methods for a DataFrame.

Plot types

Supported plottypes are at the moment:

• Pandas & Pyspark DataFrames
  • lineplot
  • pointplot
  • stepplot
  • scatterplot
  • barplot
  • histogram
  • areaplot
  • pieplot
  • mapplot
     
• Geoplots (Point, Line, Polygon) with GeoPandas

Also, check out the complementary chapter Outputs, Formatting & Layouts about:

• Output options (how to get HTML representation of Bokeh plots)
• Number formats in Pandas-Bokeh (modify Hovertool number format, suppress scientific notation on axes)
• Dashboard layouts (How to layout multiple plots in rows, columns and grids)

Lineplot

Basic Lineplot

This simple lineplot in Pandas-Bokeh already contains various interactive elements:

• a pannable and zoomable (zoom in plotarea and zoom on axis) plot
• by clicking on the legend elements, one can hide and show the individual lines
• a Hovertool for the plotted lines

Consider the following simple example:

import numpy as np

np.random.seed(42)
df = pd.DataFrame({"Google": np.random.randn(1000)+0.2, 
                   "Apple": np.random.randn(1000)+0.17}, 
                   index=pd.date_range('1/1/2000', periods=1000))
df = df.cumsum()
df = df + 50
df.plot_bokeh(kind="line")       #equivalent to df.plot_bokeh.line()

Note, that similar to the regular pandas.DataFrame.plot method, there are also additional accessors to directly access the different plotting types like:

• df.plot_bokeh(kind="line", ...) → df.plot_bokeh.line(...)
• df.plot_bokeh(kind="bar", ...) → df.plot_bokeh.bar(...)
• df.plot_bokeh(kind="hist", ...) → df.plot_bokeh.hist(...)
• ...

Advanced Lineplot

There are various optional parameters to tune the plots, for example:

• kind: Which kind of plot should be produced. Currently supported are: "line", "point", "scatter", "bar" and "histogram". In the near future many more will be implemented as horizontal barplot, boxplots, pie-charts, etc.
• x: Name of the column to use for the horizontal x-axis. If the x parameter is not specified, the index is used for the x-values of the plot. Alternative, also an array of values can be passed that has the same number of elements as the DataFrame.
• y: Name of column or list of names of columns to use for the vertical y-axis.
• figsize: Choose width & height of the plot
• title: Sets title of the plot
• xlim/ylim: Set visibler range of plot for x- and y-axis (also works for datetime x-axis)
• xlabel/ylabel: Set x- and y-labels
• logx/logy: Set log-scale on x-/y-axis
• xticks/yticks: Explicitly set the ticks on the axes
• color: Defines a single color for a plot.
• colormap: Can be used to specify multiple colors to plot. Can be either a list of colors or the name of a Bokeh color palette
• hovertool: If True a Hovertool is active, else if False no Hovertool is drawn.
• hovertool_string: If specified, this string will be used for the hovertool (@{column} will be replaced by the value of the column for the element the mouse hovers over, see also Bokeh documentation and here)
• toolbar_location: Specify the position of the toolbar location (None, "above", "below", "left" or "right"). Default: "right"
• zooming: Enables/Disables zooming. Default: True
• panning: Enables/Disables panning. Default: True
• fontsize_label/fontsize_ticks/fontsize_title/fontsize_legend: Set fontsize of labels, ticks, title or legend (int or string of form "15pt")
• rangetool Enables a range tool scroller. Default False
• kwargs**: Optional keyword arguments of bokeh.plotting.figure.line

Try them out to get a feeling for the effects. Let us consider now:

df.plot_bokeh.line(
    figsize=(800, 450),
    y="Apple",
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(0, 400),
    toolbar_location=None,
    colormap=["red", "blue"],
    hovertool_string=r"""<img
                        src='https://upload.wikimedia.org/wikipedia/commons/thumb/f/fa/Apple_logo_black.svg/170px-Apple_logo_black.svg.png' 
                        height="42" alt="@imgs" width="42"
                        style="float: left; margin: 0px 15px 15px 0px;"
                        border="2"></img> Apple 
                        
                        <h4> Stock Price: </h4> @{Apple}""",
    panning=False,
    zooming=False)

Lineplot with data points

For lineplots, as for many other plot-kinds, there are some special keyword arguments that only work for this plotting type. For lineplots, these are:

• plot_data_points: Plot also the data points on the lines
• plot_data_points_size: Determines the size of the data points
• marker: Defines the point type (Default: "circle"). Possible values are: 'circle', 'square', 'triangle', 'asterisk', 'circle_x', 'square_x', 'inverted_triangle', 'x', 'circle_cross', 'square_cross', 'diamond', 'cross'
• kwargs**: Optional keyword arguments of bokeh.plotting.figure.line

Let us use this information to have another version of the same plot:

df.plot_bokeh.line(
    figsize=(800, 450),
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(100, 200),
    xlim=("2001-01-01", "2001-02-01"),
    colormap=["red", "blue"],
    plot_data_points=True,
    plot_data_points_size=10,
    marker="asterisk")

Lineplot with rangetool

ts = pd.Series(np.random.randn(1000), index=pd.date_range('1/1/2000', periods=1000))
df = pd.DataFrame(np.random.randn(1000, 4), index=ts.index, columns=list('ABCD'))
df = df.cumsum()

df.plot_bokeh(rangetool=True)

Pointplot

If you just wish to draw the date points for curves, the pointplot option is the right choice. It also accepts the kwargs of bokeh.plotting.figure.scatter like marker or size:

import numpy as np

x = np.arange(-3, 3, 0.1)
y2 = x**2
y3 = x**3
df = pd.DataFrame({"x": x, "Parabula": y2, "Cube": y3})
df.plot_bokeh.point(
    x="x",
    xticks=range(-3, 4),
    size=5,
    colormap=["#009933", "#ff3399"],
    title="Pointplot (Parabula vs. Cube)",
    marker="x")

Stepplot

With a similar API as the line- & pointplots, one can generate a stepplot. Additional keyword arguments for this plot type are passes to bokeh.plotting.figure.step, e.g. mode (before, after, center), see the following example

import numpy as np

x = np.arange(-3, 3, 1)
y2 = x**2
y3 = x**3
df = pd.DataFrame({"x": x, "Parabula": y2, "Cube": y3})
df.plot_bokeh.step(
    x="x",
    xticks=range(-1, 1),
    colormap=["#009933", "#ff3399"],
    title="Pointplot (Parabula vs. Cube)",
    figsize=(800,300),
    fontsize_title=30,
    fontsize_label=25,
    fontsize_ticks=15,
    fontsize_legend=5,
    )

df.plot_bokeh.step(
    x="x",
    xticks=range(-1, 1),
    colormap=["#009933", "#ff3399"],
    title="Pointplot (Parabula vs. Cube)",
    mode="after",
    figsize=(800,300)
    )

Note that the step-plot API of Bokeh does so far not support a hovertool functionality.

Scatterplot

A basic scatterplot can be created using the kind="scatter" option. For scatterplots, the x and y parameters have to be specified and the following optional keyword argument is allowed:

category: Determines the category column to use for coloring the scatter points

kwargs**: Optional keyword arguments of bokeh.plotting.figure.scatter

Note, that the pandas.DataFrame.plot_bokeh() method return per default a Bokeh figure, which can be embedded in Dashboard layouts with other figures and Bokeh objects (for more details about (sub)plot layouts and embedding the resulting Bokeh plots as HTML click here).

In the example below, we use the building grid layout support of Pandas-Bokeh to display both the DataFrame (using a Bokeh DataTable) and the resulting scatterplot:

# Load Iris Dataset:
df = pd.read_csv(
    r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/iris/iris.csv"
)
df = df.sample(frac=1)

# Create Bokeh-Table with DataFrame:
from bokeh.models.widgets import DataTable, TableColumn
from bokeh.models import ColumnDataSource

data_table = DataTable(
    columns=[TableColumn(field=Ci, title=Ci) for Ci in df.columns],
    source=ColumnDataSource(df),
    height=300,
)

# Create Scatterplot:
p_scatter = df.plot_bokeh.scatter(
    x="petal length (cm)",
    y="sepal width (cm)",
    category="species",
    title="Iris DataSet Visualization",
    show_figure=False,
)

# Combine Table and Scatterplot via grid layout:
pandas_bokeh.plot_grid([[data_table, p_scatter]], plot_width=400, plot_height=350)

 

A possible optional keyword parameters that can be passed to bokeh.plotting.figure.scatter is size. Below, we use the sepal length of the Iris data as reference for the size:

#Change one value to clearly see the effect of the size keyword
df.loc[13, "sepal length (cm)"] = 15

#Make scatterplot:
p_scatter = df.plot_bokeh.scatter(
    x="petal length (cm)",
    y="sepal width (cm)",
    category="species",
    title="Iris DataSet Visualization with Size Keyword",
    size="sepal length (cm)")

In this example you can see, that the additional dimension sepal length cannot be used to clearly differentiate between the virginica and versicolor species.

Barplot

The barplot API has no special keyword arguments, but accepts optional kwargs of bokeh.plotting.figure.vbar like alpha. It uses per default the index for the bar categories (however, also columns can be used as x-axis category using the x argument).

data = {
    'fruits':
    ['Apples', 'Pears', 'Nectarines', 'Plums', 'Grapes', 'Strawberries'],
    '2015': [2, 1, 4, 3, 2, 4],
    '2016': [5, 3, 3, 2, 4, 6],
    '2017': [3, 2, 4, 4, 5, 3]
}
df = pd.DataFrame(data).set_index("fruits")

p_bar = df.plot_bokeh.bar(
    ylabel="Price per Unit [€]", 
    title="Fruit prices per Year", 
    alpha=0.6)

Using the stacked keyword argument you also maked stacked barplots:

p_stacked_bar = df.plot_bokeh.bar(
    ylabel="Price per Unit [€]",
    title="Fruit prices per Year",
    stacked=True,
    alpha=0.6)

Also horizontal versions of the above barplot are supported with the keyword kind="barh" or the accessor plot_bokeh.barh. You can still specify a column of the DataFrame as the bar category via the x argument if you do not wish to use the index.

#Reset index, such that "fruits" is now a column of the DataFrame:
df.reset_index(inplace=True)

#Create horizontal bar (via kind keyword):
p_hbar = df.plot_bokeh(
    kind="barh",
    x="fruits",
    xlabel="Price per Unit [€]",
    title="Fruit prices per Year",
    alpha=0.6,
    legend = "bottom_right",
    show_figure=False)

#Create stacked horizontal bar (via barh accessor):
p_stacked_hbar = df.plot_bokeh.barh(
    x="fruits",
    stacked=True,
    xlabel="Price per Unit [€]",
    title="Fruit prices per Year",
    alpha=0.6,
    legend = "bottom_right",
    show_figure=False)

#Plot all barplot examples in a grid:
pandas_bokeh.plot_grid([[p_bar, p_stacked_bar],
                        [p_hbar, p_stacked_hbar]], 
                       plot_width=450)

Histogram

For drawing histograms (kind="hist"), Pandas-Bokeh has a lot of customization features. Optional keyword arguments for histogram plots are:

• bins: Determines bins to use for the histogram. If bins is an int, it defines the number of equal-width bins in the given range (10, by default). If bins is a sequence, it defines the bin edges, including the rightmost edge, allowing for non-uniform bin widths. If bins is a string, it defines the method used to calculate the optimal bin width, as defined by histogram_bin_edges.
• histogram_type: Either "sidebyside", "topontop" or "stacked". Default: "topontop"
• stacked: Boolean that overrides the histogram_type as "stacked" if given. Default: False
• kwargs**: Optional keyword arguments of bokeh.plotting.figure.quad

Below examples of the different histogram types:

import numpy as np

df_hist = pd.DataFrame({
    'a': np.random.randn(1000) + 1,
    'b': np.random.randn(1000),
    'c': np.random.randn(1000) - 1
    },
    columns=['a', 'b', 'c'])

#Top-on-Top Histogram (Default):
df_hist.plot_bokeh.hist(
    bins=np.linspace(-5, 5, 41),
    vertical_xlabel=True,
    hovertool=False,
    title="Normal distributions (Top-on-Top)",
    line_color="black")

#Side-by-Side Histogram (multiple bars share bin side-by-side) also accessible via
#kind="hist":
df_hist.plot_bokeh(
    kind="hist",
    bins=np.linspace(-5, 5, 41),
    histogram_type="sidebyside",
    vertical_xlabel=True,
    hovertool=False,
    title="Normal distributions (Side-by-Side)",
    line_color="black")

#Stacked histogram:
df_hist.plot_bokeh.hist(
    bins=np.linspace(-5, 5, 41),
    histogram_type="stacked",
    vertical_xlabel=True,
    hovertool=False,
    title="Normal distributions (Stacked)",
    line_color="black")

Further, advanced keyword arguments for histograms are:

• weights: A column of the DataFrame that is used as weight for the histogramm aggregation (see also numpy.histogram)
• normed: If True, histogram values are normed to 1 (sum of histogram values=1). It is also possible to pass an integer, e.g. normed=100 would result in a histogram with percentage y-axis (sum of histogram values=100). Default: False
• cumulative: If True, a cumulative histogram is shown. Default: False
• show_average: If True, the average of the histogram is also shown. Default: False

Their usage is shown in these examples:

p_hist = df_hist.plot_bokeh.hist(
    y=["a", "b"],
    bins=np.arange(-4, 6.5, 0.5),
    normed=100,
    vertical_xlabel=True,
    ylabel="Share[%]",
    title="Normal distributions (normed)",
    show_average=True,
    xlim=(-4, 6),
    ylim=(0, 30),
    show_figure=False)

p_hist_cum = df_hist.plot_bokeh.hist(
    y=["a", "b"],
    bins=np.arange(-4, 6.5, 0.5),
    normed=100,
    cumulative=True,
    vertical_xlabel=True,
    ylabel="Share[%]",
    title="Normal distributions (normed & cumulative)",
    show_figure=False)

pandas_bokeh.plot_grid([[p_hist, p_hist_cum]], plot_width=450, plot_height=300)

Areaplot

Areaplot (kind="area") can be either drawn on top of each other or stacked. The important parameters are:

stacked: If True, the areaplots are stacked. If False, plots are drawn on top of each other. Default: False

kwargs**: Optional keyword arguments of bokeh.plotting.figure.patch

Let us consider the energy consumption split by source that can be downloaded as DataFrame via:

df_energy = pd.read_csv(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/energy/energy.csv", 
parse_dates=["Year"])
df_energy.head()

Year	Oil	Gas	Coal	Nuclear Energy	Hydroelectricity	Other Renewable
1970-01-01	2291.5	826.7	1467.3	17.7	265.8	5.8
1971-01-01	2427.7	884.8	1459.2	24.9	276.4	6.3
1972-01-01	2613.9	933.7	1475.7	34.1	288.9	6.8
1973-01-01	2818.1	978.0	1519.6	45.9	292.5	7.3
1974-01-01	2777.3	1001.9	1520.9	59.6	321.1	7.7

Creating the Areaplot can be achieved via:

df_energy.plot_bokeh.area(
    x="Year",
    stacked=True,
    legend="top_left",
    colormap=["brown", "orange", "black", "grey", "blue", "green"],
    title="Worldwide energy consumption split by energy source",
    ylabel="Million tonnes oil equivalent",
    ylim=(0, 16000))

Note that the energy consumption of fossile energy is still increasing and renewable energy sources are still small in comparison 😢!!! However, when we norm the plot using the normed keyword, there is a clear trend towards renewable energies in the last decade:

df_energy.plot_bokeh.area(
    x="Year",
    stacked=True,
    normed=100,
    legend="bottom_left",
    colormap=["brown", "orange", "black", "grey", "blue", "green"],
    title="Worldwide energy consumption split by energy source",
    ylabel="Million tonnes oil equivalent")

Pieplot

For Pieplots, let us consider a dataset showing the results of all Bundestags elections in Germany since 2002:

df_pie = pd.read_csv(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/Bundestagswahl/Bundestagswahl.csv")
df_pie

Partei	2002	2005	2009	2013	2017
CDU/CSU	38.5	35.2	33.8	41.5	32.9
SPD	38.5	34.2	23.0	25.7	20.5
FDP	7.4	9.8	14.6	4.8	10.7
Grünen	8.6	8.1	10.7	8.4	8.9
Linke/PDS	4.0	8.7	11.9	8.6	9.2
AfD	0.0	0.0	0.0	0.0	12.6
Sonstige	3.0	4.0	6.0	11.0	5.0

We can create a Pieplot of the last election in 2017 by specifying the "Partei" (german for party) column as the x column and the "2017" column as the y column for values:

df_pie.plot_bokeh.pie(
    x="Partei",
    y="2017",
    colormap=["blue", "red", "yellow", "green", "purple", "orange", "grey"],
    title="Results of German Bundestag Election 2017",
    )

When you pass several columns to the y parameter (not providing the y-parameter assumes you plot all columns), multiple nested pieplots will be shown in one plot:

df_pie.plot_bokeh.pie(
    x="Partei",
    colormap=["blue", "red", "yellow", "green", "purple", "orange", "grey"],
    title="Results of German Bundestag Elections [2002-2017]",
    line_color="grey")

Mapplot

The mapplot method of Pandas-Bokeh allows for plotting geographic points stored in a Pandas DataFrame on an interactive map. For more advanced Geoplots for line and polygon shapes have a look at the Geoplots examples for the GeoPandas API of Pandas-Bokeh.

For mapplots, only (latitude, longitude) pairs in geographic projection (WGS84) can be plotted on a map. The basic API has the following 2 base parameters:

• x: name of the longitude column of the DataFrame
• y: name of the latitude column of the DataFrame

The other optional keyword arguments are discussed in the section about the GeoPandas API, e.g. category for coloring the points.

Below an example of plotting all cities for more than 1 million inhabitants:

df_mapplot = pd.read_csv(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/populated%20places/populated_places.csv")
df_mapplot.head()

name	pop_max	latitude	longitude	size
Mesa	1085394	33.423915	-111.736084	1.085394
Sharjah	1103027	25.371383	55.406478	1.103027
Changwon	1081499	35.219102	128.583562	1.081499
Sheffield	1292900	53.366677	-1.499997	1.292900
Abbottabad	1183647	34.149503	73.199501	1.183647

df_mapplot["size"] = df_mapplot["pop_max"] / 1000000
df_mapplot.plot_bokeh.map(
    x="longitude",
    y="latitude",
    hovertool_string="""<h2> @{name} </h2> 
    
                        <h3> Population: @{pop_max} </h3>""",
    tile_provider="STAMEN_TERRAIN_RETINA",
    size="size", 
    figsize=(900, 600),
    title="World cities with more than 1.000.000 inhabitants")

 

Geoplots

Pandas-Bokeh also allows for interactive plotting of Maps using GeoPandas by providing a geopandas.GeoDataFrame.plot_bokeh() method. It allows to plot the following geodata on a map :

• Points/MultiPoints
• Lines/MultiLines
• Polygons/MultiPolygons

Note: t is not possible to mix up the objects types, i.e. a GeoDataFrame with Points and Lines is for example not allowed.

Les us start with a simple example using the "World Borders Dataset" . Let us first import all neccessary libraries and read the shapefile:

import geopandas as gpd
import pandas as pd
import pandas_bokeh
pandas_bokeh.output_notebook()

#Read in GeoJSON from URL:
df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")
df_states.head()

STATE_NAME	REGION	POPESTIMATE2010	POPESTIMATE2011	POPESTIMATE2012	POPESTIMATE2013	POPESTIMATE2014	POPESTIMATE2015	POPESTIMATE2016	POPESTIMATE2017	geometry
Hawaii	4	1363817	1378323	1392772	1408038	1417710	1426320	1428683	1427538	(POLYGON ((-160.0738033454681 22.0041773479577...
Washington	4	6741386	6819155	6890899	6963410	7046931	7152818	7280934	7405743	(POLYGON ((-122.4020153103835 48.2252163723779...
Montana	4	990507	996866	1003522	1011921	1019931	1028317	1038656	1050493	POLYGON ((-111.4754253002074 44.70216236909688...
Maine	1	1327568	1327968	1328101	1327975	1328903	1327787	1330232	1335907	(POLYGON ((-69.77727626137293 44.0741483685119...
North Dakota	2	674518	684830	701380	722908	738658	754859	755548	755393	POLYGON ((-98.73043728833767 45.93827137024809...

Plotting the data on a map is as simple as calling:

df_states.plot_bokeh(simplify_shapes=10000)

We also passed the optional parameter simplify_shapes (~meter) to improve plotting performance (for a reference see shapely.object.simplify). The above geolayer thus has an accuracy of about 10km.

Many keyword arguments like xlabel, ylabel, xlim, ylim, title, colormap, hovertool, zooming, panning, ... for costumizing the plot are also available for the geoplotting API and can be uses as in the examples shown above. There are however also many other options especially for plotting geodata:

• geometry_column: Specify the column that stores the geometry-information (default: "geometry")
• hovertool_columns: Specify column names, for which values should be shown in hovertool
• hovertool_string: If specified, this string will be used for the hovertool (@{column} will be replaced by the value of the column for the element the mouse hovers over, see also Bokeh documentation)
• colormap_uselog: If set True, the colormapper is using a logscale. Default: False
• colormap_range: Specify the value range of the colormapper via (min, max) tuple
• tile_provider: Define build-in tile provider for background maps. Possible values: None, 'CARTODBPOSITRON', 'CARTODBPOSITRON_RETINA', 'STAMEN_TERRAIN', 'STAMEN_TERRAIN_RETINA', 'STAMEN_TONER', 'STAMEN_TONER_BACKGROUND', 'STAMEN_TONER_LABELS'. Default: CARTODBPOSITRON_RETINA
• tile_provider_url: An arbitraty tile_provider_url of the form '/{Z}/{X}/{Y}*.png' can be passed to be used as background map.
• tile_attribution: String (also HTML accepted) for showing attribution for tile source in the lower right corner
• tile_alpha: Sets the alpha value of the background tile between [0, 1]. Default: 1

One of the most common usage of map plots are choropleth maps, where the color of a the objects is determined by the property of the object itself. There are 3 ways of drawing choropleth maps using Pandas-Bokeh, which are described below.

Categories

This is the simplest way. Just provide the category keyword for the selection of the property column:

• category: Specifies the column of the GeoDataFrame that should be used to draw a choropleth map
• show_colorbar: Whether or not to show a colorbar for categorical plots. Default: True

Let us now draw the regions as a choropleth plot using the category keyword (at the moment, only numerical columns are supported for choropleth plots):

df_states.plot_bokeh(
    figsize=(900, 600),
    simplify_shapes=5000,
    category="REGION",
    show_colorbar=False,
    colormap=["blue", "yellow", "green", "red"],
    hovertool_columns=["STATE_NAME", "REGION"],
    tile_provider="STAMEN_TERRAIN_RETINA")

When hovering over the states, the state-name and the region are shown as specified in the hovertool_columns argument.

Dropdown

By passing a list of column names of the GeoDataFrame as the dropdown keyword argument, a dropdown menu is shown above the map. This dropdown menu can be used to select the choropleth layer by the user. :

df_states["STATE_NAME_SMALL"] = df_states["STATE_NAME"].str.lower()

df_states.plot_bokeh(
    figsize=(900, 600),
    simplify_shapes=5000,
    dropdown=["POPESTIMATE2010", "POPESTIMATE2017"],
    colormap="Viridis",
    hovertool_string="""
                        <img
                        src="https://www.states101.com/img/flags/gif/small/@STATE_NAME_SMALL.gif" 
                        height="42" alt="@imgs" width="42"
                        style="float: left; margin: 0px 15px 15px 0px;"
                        border="2"></img>
                
                        <h2>  @STATE_NAME </h2>
                        <h3> 2010: @POPESTIMATE2010 </h3>
                        <h3> 2017: @POPESTIMATE2017 </h3>""",
    tile_provider_url=r"http://c.tile.stamen.com/watercolor/{Z}/{X}/{Y}.jpg",
    tile_attribution='Map tiles by <a href="http://stamen.com">Stamen Design</a>, under <a href="http://creativecommons.org/licenses/by/3.0">CC BY 3.0</a>. Data by <a href="http://openstreetmap.org">OpenStreetMap</a>, under <a href="http://www.openstreetmap.org/copyright">ODbL</a>.'
    )

Using hovertool_string, one can pass a string that can contain arbitrary HTML elements (including divs, images, ...) that is shown when hovering over the geographies (@{column} will be replaced by the value of the column for the element the mouse hovers over, see also Bokeh documentation).

Here, we also used an OSM tile server with watercolor style via tile_provider_url and added the attribution via tile_attribution.

Sliders

Another option for interactive choropleth maps is the slider implementation of Pandas-Bokeh. The possible keyword arguments are here:

• slider: By passing a list of column names of the GeoDataFrame, a slider can be used to . This dropdown menu can be used to select the choropleth layer by the user.
• slider_range: Pass a range (or numpy.arange) of numbers object to relate the sliders values with the slider columns. By passing range(0,10), the slider will have values [0, 1, 2, ..., 9], when passing numpy.arange(3,5,0.5), the slider will have values [3, 3.5, 4, 4.5]. Default: range(0, len(slider))
• slider_name: Specifies the title of the slider. Default is an empty string.

This can be used to display the change in population relative to the year 2010:

#Calculate change of population relative to 2010:
for i in range(8):
    df_states["Delta_Population_201%d"%i] = ((df_states["POPESTIMATE201%d"%i] / df_states["POPESTIMATE2010"]) -1 ) * 100

#Specify slider columns:
slider_columns = ["Delta_Population_201%d"%i for i in range(8)]

#Specify slider-range (Maps "Delta_Population_2010" -> 2010, 
#                           "Delta_Population_2011" -> 2011, ...):
slider_range = range(2010, 2018)

#Make slider plot:
df_states.plot_bokeh(
    figsize=(900, 600),
    simplify_shapes=5000,
    slider=slider_columns,
    slider_range=slider_range,
    slider_name="Year", 
    colormap="Inferno",
    hovertool_columns=["STATE_NAME"] + slider_columns,
    title="Change of Population [%]")

Plot multiple geolayers

If you wish to display multiple geolayers, you can pass the Bokeh figure of a Pandas-Bokeh plot via the figure keyword to the next plot_bokeh() call:

import geopandas as gpd
import pandas_bokeh
pandas_bokeh.output_notebook()

# Read in GeoJSONs from URL:
df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")
df_cities = gpd.read_file(
    r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/populated%20places/ne_10m_populated_places_simple_bigcities.geojson"
)
df_cities["size"] = df_cities.pop_max / 400000

#Plot shapes of US states (pass figure options to this initial plot):
figure = df_states.plot_bokeh(
    figsize=(800, 450),
    simplify_shapes=10000,
    show_figure=False,
    xlim=[-170, -80],
    ylim=[10, 70],
    category="REGION",
    colormap="Dark2",
    legend="States",
    show_colorbar=False,
)

#Plot cities as points on top of the US states layer by passing the figure:
df_cities.plot_bokeh(
    figure=figure,         # <== pass figure here!
    category="pop_max",
    colormap="Viridis",
    colormap_uselog=True,
    size="size",
    hovertool_string="""<h1>@name</h1>
                        <h3>Population: @pop_max </h3>""",
    marker="inverted_triangle",
    legend="Cities",
)

Point & Line plots:

Below, you can see an example that use Pandas-Bokeh to plot point data on a map. The plot shows all cities with a population larger than 1.000.000. For point plots, you can select the marker as keyword argument (since it is passed to bokeh.plotting.figure.scatter). Here an overview of all available marker types:

gdf = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/populated%20places/ne_10m_populated_places_simple_bigcities.geojson")
gdf["size"] = gdf.pop_max / 400000

gdf.plot_bokeh(
    category="pop_max",
    colormap="Viridis",
    colormap_uselog=True,
    size="size",
    hovertool_string="""<h1>@name</h1>
                        <h3>Population: @pop_max </h3>""",
    xlim=[-15, 35],
    ylim=[30,60],
    marker="inverted_triangle");

In a similar way, also GeoDataFrames with (multi)line shapes can be drawn using Pandas-Bokeh.

Colorbar formatting:

If you want to display the numerical labels on your colorbar with an alternative to the scientific format, you can pass in a one of the bokeh number string formats or an instance of one of the bokeh.models.formatters to the colorbar_tick_format argument in the geoplot

An example of using the string format argument:

df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")

df_states["STATE_NAME_SMALL"] = df_states["STATE_NAME"].str.lower()

# pass in a string format to colorbar_tick_format to display the ticks as 10m rather than 1e7
df_states.plot_bokeh(
    figsize=(900, 600),
    category="POPESTIMATE2017",
    simplify_shapes=5000,    
    colormap="Inferno",
    colormap_uselog=True,
    colorbar_tick_format="0.0a")

An example of using the bokeh PrintfTickFormatter:

df_states = gpd.read_file(r"https://raw.githubusercontent.com/PatrikHlobil/Pandas-Bokeh/master/docs/Testdata/states/states.geojson")

df_states["STATE_NAME_SMALL"] = df_states["STATE_NAME"].str.lower()

for i in range(8):
    df_states["Delta_Population_201%d"%i] = ((df_states["POPESTIMATE201%d"%i] / df_states["POPESTIMATE2010"]) -1 ) * 100

# pass in a PrintfTickFormatter instance colorbar_tick_format to display the ticks with 2 decimal places  
df_states.plot_bokeh(
    figsize=(900, 600),
    category="Delta_Population_2017",
    simplify_shapes=5000,    
    colormap="Inferno",
    colorbar_tick_format=PrintfTickFormatter(format="%4.2f"))

Outputs, Formatting & Layouts

 

Output options

The pandas.DataFrame.plot_bokeh API has the following additional keyword arguments:

• show_figure: If True, the resulting figure is shown (either in the notebook or exported and shown as HTML file, see Basics. If False, None is returned. Default: True
• return_html: If True, the method call returns an HTML string that contains all Bokeh CSS&JS resources and the figure embedded in a div. This HTML representation of the plot can be used for embedding the plot in an HTML document. Default: False

If you have a Bokeh figure or layout, you can also use the pandas_bokeh.embedded_html function to generate an embeddable HTML representation of the plot. This can be included into any valid HTML (note that this is not possible directly with the HTML generated by the pandas_bokeh.output_file output option, because it includes an HTML header). Let us consider the following simple example:

#Import Pandas and Pandas-Bokeh (if you do not specify an output option, the standard is
#output_file):
import pandas as pd
import pandas_bokeh

#Create DataFrame to Plot:
import numpy as np
x = np.arange(-10, 10, 0.1)
sin = np.sin(x)
cos = np.cos(x)
tan = np.tan(x)
df = pd.DataFrame({"x": x, "sin(x)": sin, "cos(x)": cos, "tan(x)": tan})

#Make Bokeh plot from DataFrame using Pandas-Bokeh. Do not show the plot, but export
#it to an embeddable HTML string:
html_plot = df.plot_bokeh(
    kind="line",
    x="x",
    y=["sin(x)", "cos(x)", "tan(x)"],
    xticks=range(-20, 20),
    title="Trigonometric functions",
    show_figure=False,
    return_html=True,
    ylim=(-1.5, 1.5))

#Write some HTML and embed the HTML plot below it. For production use, please use
#Templates and the awesome Jinja library.
html = r"""
<script type="text/x-mathjax-config">
  MathJax.Hub.Config({tex2jax: {inlineMath: [['$','$'], ['\\(','\\)']]}});
</script>
<script type="text/javascript"
  src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML">
</script>

<h1> Trigonometric functions </h1>

<p> The basic trigonometric functions are:</p>

<p>$ sin(x) $</p>
<p>$ cos(x) $</p>
<p>$ tan(x) = \frac{sin(x)}{cos(x)}$</p>

<p>Below is a plot that shows them</p>

""" + html_plot

#Export the HTML string to an external HTML file and show it:
with open("test.html" , "w") as f:
    f.write(html)
    
import webbrowser
webbrowser.open("test.html")

This code will open up a webbrowser and show the following page. As you can see, the interactive Bokeh plot is embedded nicely into the HTML layout. The return_html option is ideal for the use in a templating engine like Jinja.

Auto Scaling Plots

For single plots that have a number of x axis values or for larger monitors, you can auto scale the figure to the width of the entire jupyter cell by setting the sizing_mode parameter.

df = pd.DataFrame(np.random.rand(10, 4), columns=['a', 'b', 'c', 'd'])

df.plot_bokeh(kind="bar", figsize=(500, 200), sizing_mode="scale_width")

The figsize parameter can be used to change the height and width as well as act as a scaling multiplier against the axis that is not being scaled.

 

Number formats

To change the formats of numbers in the hovertool, use the number_format keyword argument. For a documentation about the format to pass, have a look at the Bokeh documentation.Let us consider some examples for the number 3.141592653589793:

Format	Output
0	3
0.000	3.141
0.00 $	3.14 $

This number format will be applied to all numeric columns of the hovertool. If you want to make a very custom or complicated hovertool, you should probably use the hovertool_string keyword argument, see e.g. this example. Below, we use the number_format parameter to specify the "Stock Price" format to 2 decimal digits and an additional $ sign.

import numpy as np

#Lineplot:
np.random.seed(42)
df = pd.DataFrame({
    "Google": np.random.randn(1000) + 0.2,
    "Apple": np.random.randn(1000) + 0.17
},
                  index=pd.date_range('1/1/2000', periods=1000))
df = df.cumsum()
df = df + 50
df.plot_bokeh(
    kind="line",
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(0, 400),
    colormap=["red", "blue"],
    number_format="1.00 $")

Suppress scientific notation for axes

If you want to suppress the scientific notation for axes, you can use the disable_scientific_axes parameter, which accepts one of "x", "y", "xy":

df = pd.DataFrame({"Animal": ["Mouse", "Rabbit", "Dog", "Tiger", "Elefant", "Wale"],
                   "Weight [g]": [19, 3000, 40000, 200000, 6000000, 50000000]})
p_scientific = df.plot_bokeh(x="Animal", y="Weight [g]", show_figure=False)
p_non_scientific = df.plot_bokeh(x="Animal", y="Weight [g]", disable_scientific_axes="y", show_figure=False,)
pandas_bokeh.plot_grid([[p_scientific, p_non_scientific]], plot_width = 450)

 

Dashboard Layouts

As shown in the Scatterplot Example, combining plots with plots or other HTML elements is straighforward in Pandas-Bokeh due to the layout capabilities of Bokeh. The easiest way to generate a dashboard layout is using the pandas_bokeh.plot_grid method (which is an extension of bokeh.layouts.gridplot):

import pandas as pd
import numpy as np
import pandas_bokeh
pandas_bokeh.output_notebook()

#Barplot:
data = {
    'fruits':
    ['Apples', 'Pears', 'Nectarines', 'Plums', 'Grapes', 'Strawberries'],
    '2015': [2, 1, 4, 3, 2, 4],
    '2016': [5, 3, 3, 2, 4, 6],
    '2017': [3, 2, 4, 4, 5, 3]
}
df = pd.DataFrame(data).set_index("fruits")
p_bar = df.plot_bokeh(
    kind="bar",
    ylabel="Price per Unit [€]",
    title="Fruit prices per Year",
    show_figure=False)

#Lineplot:
np.random.seed(42)
df = pd.DataFrame({
    "Google": np.random.randn(1000) + 0.2,
    "Apple": np.random.randn(1000) + 0.17
},
                  index=pd.date_range('1/1/2000', periods=1000))
df = df.cumsum()
df = df + 50
p_line = df.plot_bokeh(
    kind="line",
    title="Apple vs Google",
    xlabel="Date",
    ylabel="Stock price [$]",
    yticks=[0, 100, 200, 300, 400],
    ylim=(0, 400),
    colormap=["red", "blue"],
    show_figure=False)

#Scatterplot:
from sklearn.datasets import load_iris
iris = load_iris()
df = pd.DataFrame(iris["data"])
df.columns = iris["feature_names"]
df["species"] = iris["target"]
df["species"] = df["species"].map(dict(zip(range(3), iris["target_names"])))
p_scatter = df.plot_bokeh(
    kind="scatter",
    x="petal length (cm)",
    y="sepal width (cm)",
    category="species",
    title="Iris DataSet Visualization",
    show_figure=False)

#Histogram:
df_hist = pd.DataFrame({
    'a': np.random.randn(1000) + 1,
    'b': np.random.randn(1000),
    'c': np.random.randn(1000) - 1
},
                       columns=['a', 'b', 'c'])

p_hist = df_hist.plot_bokeh(
    kind="hist",
    bins=np.arange(-6, 6.5, 0.5),
    vertical_xlabel=True,
    normed=100,
    hovertool=False,
    title="Normal distributions",
    show_figure=False)

#Make Dashboard with Grid Layout:
pandas_bokeh.plot_grid([[p_line, p_bar], 
                        [p_scatter, p_hist]], plot_width=450)

Using a combination of row and column elements (see also Bokeh Layouts) allow for a very easy general arrangement of elements. An alternative layout to the one above is:

p_line.plot_width = 900
p_hist.plot_width = 900

layout = pandas_bokeh.column(p_line,
                pandas_bokeh.row(p_scatter, p_bar),
                p_hist)

pandas_bokeh.show(layout)

Release Notes

Release Notes can be found here.

Contributing to Pandas-Bokeh

If you wish to contribute to the development of Pandas-Bokeh you can follow the instructions on the CONTRIBUTING.md.

Download Details:
Author: PatrikHlobil
Source Code: https://github.com/PatrikHlobil/Pandas-Bokeh
License: MIT License

#pandas  #python #bokeh #Ploty

How to Automate Excel with Python | Python Excel Tutorial (OpenPyXL)

How to Automate Excel with Python

In this article, We will show how we can use python to automate Excel . A useful Python library is Openpyxl which we will learn to do Excel Automation

What is OPENPYXL

Openpyxl is a Python library that is used to read from an Excel file or write to an Excel file. Data scientists use Openpyxl for data analysis, data copying, data mining, drawing charts, styling sheets, adding formulas, and more.

Workbook: A spreadsheet is represented as a workbook in openpyxl. A workbook consists of one or more sheets.

Sheet: A sheet is a single page composed of cells for organizing data.

Cell: The intersection of a row and a column is called a cell. Usually represented by A1, B5, etc.

Row: A row is a horizontal line represented by a number (1,2, etc.).

Column: A column is a vertical line represented by a capital letter (A, B, etc.).

Openpyxl can be installed using the pip command and it is recommended to install it in a virtual environment.

pip install openpyxl

CREATE A NEW WORKBOOK

We start by creating a new spreadsheet, which is called a workbook in Openpyxl. We import the workbook module from Openpyxl and use the function Workbook() which creates a new workbook.

from openpyxl
import Workbook
#creates a new workbook
wb = Workbook()
#Gets the first active worksheet
ws = wb.active
#creating new worksheets by using the create_sheet method

ws1 = wb.create_sheet("sheet1", 0) #inserts at first position
ws2 = wb.create_sheet("sheet2") #inserts at last position
ws3 = wb.create_sheet("sheet3", -1) #inserts at penultimate position

#Renaming the sheet
ws.title = "Example"

#save the workbook
wb.save(filename = "example.xlsx")

READING DATA FROM WORKBOOK

We load the file using the function load_Workbook() which takes the filename as an argument. The file must be saved in the same working directory.

#loading a workbook
wb = openpyxl.load_workbook("example.xlsx")

 

GETTING SHEETS FROM THE LOADED WORKBOOK

 

#getting sheet names
wb.sheetnames
result = ['sheet1', 'Sheet', 'sheet3', 'sheet2']

#getting a particular sheet
sheet1 = wb["sheet2"]

#getting sheet title
sheet1.title
result = 'sheet2'

#Getting the active sheet
sheetactive = wb.active
result = 'sheet1'

 

ACCESSING CELLS AND CELL VALUES

 

#get a cell from the sheet
sheet1["A1"] <
  Cell 'Sheet1'.A1 >

  #get the cell value
ws["A1"].value 'Segment'

#accessing cell using row and column and assigning a value
d = ws.cell(row = 4, column = 2, value = 10)
d.value
10

 

ITERATING THROUGH ROWS AND COLUMNS

 

#looping through each row and column
for x in range(1, 5):
  for y in range(1, 5):
  print(x, y, ws.cell(row = x, column = y)
    .value)

#getting the highest row number
ws.max_row
701

#getting the highest column number
ws.max_column
19

There are two functions for iterating through rows and columns.

Iter_rows() => returns the rows
Iter_cols() => returns the columns {
  min_row = 4, max_row = 5, min_col = 2, max_col = 5
} => This can be used to set the boundaries
for any iteration.

Example:

#iterating rows
for row in ws.iter_rows(min_row = 2, max_col = 3, max_row = 3):
  for cell in row:
  print(cell) <
  Cell 'Sheet1'.A2 >
  <
  Cell 'Sheet1'.B2 >
  <
  Cell 'Sheet1'.C2 >
  <
  Cell 'Sheet1'.A3 >
  <
  Cell 'Sheet1'.B3 >
  <
  Cell 'Sheet1'.C3 >

  #iterating columns
for col in ws.iter_cols(min_row = 2, max_col = 3, max_row = 3):
  for cell in col:
  print(cell) <
  Cell 'Sheet1'.A2 >
  <
  Cell 'Sheet1'.A3 >
  <
  Cell 'Sheet1'.B2 >
  <
  Cell 'Sheet1'.B3 >
  <
  Cell 'Sheet1'.C2 >
  <
  Cell 'Sheet1'.C3 >

To get all the rows of the worksheet we use the method worksheet.rows and to get all the columns of the worksheet we use the method worksheet.columns. Similarly, to iterate only through the values we use the method worksheet.values.

Example:

for row in ws.values:
  for value in row:
  print(value)

 

WRITING DATA TO AN EXCEL FILE

Writing to a workbook can be done in many ways such as adding a formula, adding charts, images, updating cell values, inserting rows and columns, etc… We will discuss each of these with an example.

 

CREATING AND SAVING A NEW WORKBOOK

 

#creates a new workbook
wb = openpyxl.Workbook()

#saving the workbook
wb.save("new.xlsx")

 

ADDING AND REMOVING SHEETS

 

#creating a new sheet
ws1 = wb.create_sheet(title = "sheet 2")

#creating a new sheet at index 0
ws2 = wb.create_sheet(index = 0, title = "sheet 0")

#checking the sheet names
wb.sheetnames['sheet 0', 'Sheet', 'sheet 2']

#deleting a sheet
del wb['sheet 0']

#checking sheetnames
wb.sheetnames['Sheet', 'sheet 2']

 

ADDING CELL VALUES

 

#checking the sheet value
ws['B2'].value
null

#adding value to cell
ws['B2'] = 367

#checking value
ws['B2'].value
367

 

ADDING FORMULAS

 

We often require formulas to be included in our Excel datasheet. We can easily add formulas using the Openpyxl module just like you add values to a cell.
 

For example:

import openpyxl
from openpyxl
import Workbook

wb = openpyxl.load_workbook("new1.xlsx")
ws = wb['Sheet']

ws['A9'] = '=SUM(A2:A8)'

wb.save("new2.xlsx")

The above program will add the formula (=SUM(A2:A8)) in cell A9. The result will be as below.

 

MERGE/UNMERGE CELLS

Two or more cells can be merged to a rectangular area using the method merge_cells(), and similarly, they can be unmerged using the method unmerge_cells().

For example:
Merge cells

#merge cells B2 to C9
ws.merge_cells('B2:C9')
ws['B2'] = "Merged cells"

Adding the above code to the previous example will merge cells as below.

UNMERGE CELLS

 

#unmerge cells B2 to C9
ws.unmerge_cells('B2:C9')

The above code will unmerge cells from B2 to C9.

INSERTING AN IMAGE

To insert an image we import the image function from the module openpyxl.drawing.image. We then load our image and add it to the cell as shown in the below example.

Example:

import openpyxl
from openpyxl
import Workbook
from openpyxl.drawing.image
import Image

wb = openpyxl.load_workbook("new1.xlsx")
ws = wb['Sheet']
#loading the image(should be in same folder)
img = Image('logo.png')
ws['A1'] = "Adding image"
#adjusting size
img.height = 130
img.width = 200
#adding img to cell A3

ws.add_image(img, 'A3')

wb.save("new2.xlsx")

Result:

CREATING CHARTS

Charts are essential to show a visualization of data. We can create charts from Excel data using the Openpyxl module chart. Different forms of charts such as line charts, bar charts, 3D line charts, etc., can be created. We need to create a reference that contains the data to be used for the chart, which is nothing but a selection of cells (rows and columns). I am using sample data to create a 3D bar chart in the below example:

Example

import openpyxl
from openpyxl
import Workbook
from openpyxl.chart
import BarChart3D, Reference, series

wb = openpyxl.load_workbook("example.xlsx")
ws = wb.active

values = Reference(ws, min_col = 3, min_row = 2, max_col = 3, max_row = 40)
chart = BarChart3D()
chart.add_data(values)
ws.add_chart(chart, "E3")
wb.save("MyChart.xlsx")

Result

---

How to Automate Excel with Python with Video Tutorial

Welcome to another video! In this video, We will cover how we can use python to automate Excel. I'll be going over everything from creating workbooks to accessing individual cells and stylizing cells. There is a ton of things that you can do with Excel but I'll just be covering the core/base things in OpenPyXl.

⭐️ Timestamps ⭐️
00:00 | Introduction
02:14 | Installing openpyxl
03:19 | Testing Installation
04:25 | Loading an Existing Workbook
06:46 | Accessing Worksheets
07:37 | Accessing Cell Values
08:58 | Saving Workbooks
09:52 | Creating, Listing and Changing Sheets
11:50 | Creating a New Workbook
12:39 | Adding/Appending Rows
14:26 | Accessing Multiple Cells
20:46 | Merging Cells
22:27 | Inserting and Deleting Rows
23:35 | Inserting and Deleting Columns
24:48 | Copying and Moving Cells
26:06 | Practical Example, Formulas & Cell Styling

📄 Resources 📄
OpenPyXL Docs: https://openpyxl.readthedocs.io/en/stable/ 
Code Written in This Tutorial: https://github.com/techwithtim/ExcelPythonTutorial 
Subscribe: https://www.youtube.com/c/TechWithTim/featured 

#python