The brain tumor is known to be one of the most aggressive and fatal diseases. It is possible to have a more cost-effective way to initially triage different types of brain tumors to get timely treatments before the brain tumor grows and becomes untreatable in the later stage. By helping the initial triage as soon as an anomaly is detected, the medical staff can prioritize those patients potentially with malignant tumors faster and in a highly efficient way. The background of this data set is that MRI scans are taken from medical professionals from different angles.
Convolutional Neural Networks for multi-classes classification used in this project is a deep learning technique with high potentials to be tuned for increased accuracy. In addition, other methods like using Keras Tuner is explored to pick the optimal set of hyperparameters.
A simple yet comprehensive approach to the concepts
Convolutional Neural Networks
Artificial intelligence has seen a tremendous growth over the last few years, The gap between machines and humans is slowly but steadily decreasing. One important difference between humans and machines is (or rather was!) with regards to human’s perception of images and sound.How do we train a machine to recognize images and sound as we do?
At this point we can ask ourselves a few questions!!!
How would the machines perceive images and sound ?
How would the machines be able to differentiate between different images for example say between a cat and a dog?
Can machines identify and differentiate between different human beings for example lets say differentiate a male from a female or identify Leonardo Di Caprio or Brad Pitt by just feeding their images to it?
Let’s attempt to find out!!!
The Colour coding system:
Lets get a basic idea of what the colour coding system for machines is
RGB decimal system: It is denoted as rgb(255, 0, 0). It consists of three channels representing RED , BLUE and GREEN respectively . RGB defines how much red, green or blue value you’d like to have displayed in a decimal value somewhere between 0, which is no representation of the color, and 255, the highest possible concentration of the color. So, in the example rgb(255, 0, 0), we’d get a very bright red. If we wanted all green, our RGB would be rgb(0, 255, 0). For a simple blue, it would be rgb(0, 0, 255).As we know all colours can be obtained as a combination of Red , Green and Blue , we can obtain the coding for any colour we want.
Gray scale: Gray scale consists of just 1 channel (0 to 255)with 0 representing black and 255 representing white. The colors in between represent the different shades of Gray.
Computers ‘see’ in a different way than we do. Their world consists of only numbers.
Every image can be represented as 2-dimensional arrays of numbers, known as pixels.
But the fact that they perceive images in a different way, doesn’t mean we can’t train them to recognize patterns, like we do. We just have to think of what an image is in a different way.
Now that we have a basic idea of how images can be represented , let us try and understand The architecture of a CNN
Convolutional Neural Networks have a different architecture than regular Neural Networks. Regular Neural Networks transform an input by putting it through a series of hidden layers. Every layer is made up of a set of neurons, where each layer is fully connected to all neurons in the layer before. Finally, there is a last fully-connected layer — the output layer — that represent the predictions.
Convolutional Neural Networks are a bit different. First of all, the layers are organised in 3 dimensions: width, height and depth. Further, the neurons in one layer do not connect to all the neurons in the next layer but only to a small region of it. Lastly, the final output will be reduced to a single vector of probability scores, organized along the depth dimension
A typical CNN architecture
As can be seen above CNNs have two components:
In this part, the network will perform a series of **convolutions **and pooling operations during which the features are detected. If you had a picture of a tiger , this is the part where the network would recognize the stripes , 4 legs , 2 eyes , one nose , distinctive orange colour etc.
Here, the fully connected layers will serve as a classifier on top of these extracted features. They will assign a** probability** for the object on the image being what the algorithm predicts it is.
Before we proceed any further we need to understand what is “convolution”, we will come back to the architecture later:
What do we mean by the “convolution” in Convolutional Neural Networks?
Let us decode!!!
#convolutional-neural-net #convolution #computer-vision #neural networks
Recurrent neural networks, also known as RNNs, are a class of neural networks that allow previous outputs to be used as inputs while having hidden states. RNN models are mostly used in the fields of natural language processing and speech recognition.
The vanishing and exploding gradient phenomena are often encountered in the context of RNNs. The reason why they happen is that it is difficult to capture long term dependencies because of multiplicative gradient that can be exponentially decreasing/increasing with respect to the number of layers.
Gated Recurrent Unit (GRU) and Long Short-Term Memory units (LSTM) deal with the vanishing gradient problem encountered by traditional RNNs, with LSTM being a generalization of GRU.
1D Convolution_ layer_ creates a convolution kernel that is convolved with the layer input over a single spatial (or temporal) dimension to produce a tensor of outputs. It is very effective for deriving features from a fixed-length segment of the overall dataset. A 1D CNN works well for natural language processing (NLP).
TensorFlow Datasets is a collection of datasets ready to use, with TensorFlow or other Python ML frameworks, such as Jax. All datasets are exposed as
[_tf.data.Datasets_](https://www.tensorflow.org/api_docs/python/tf/data/Dataset), enabling easy-to-use and high-performance input pipelines.
This is a dataset for binary sentiment classification containing substantially more data than previous benchmark datasets. It provides a set of 25,000 highly polar movie reviews for training, and 25,000 for testing.
import pandas as pd import numpy as np import matplotlib.pyplot as plt import seaborn as sns %matplotlib inline
import tensorflow as tf import tensorflow_datasets imdb, info=tensorflow_datasets.load("imdb_reviews", with_info=True, as_supervised=True) imdb
train_data, test_data=imdb['train'], imdb['test'] training_sentences= training_label= testing_sentences= testing_label= for s,l in train_data: training_sentences.append(str(s.numpy())) training_label.append(l.numpy()) for s,l in test_data: testing_sentences.append(str(s.numpy())) testing_label.append(l.numpy()) training_label_final=np.array(training_label) testing_label_final=np.array(testing_label)
vocab_size=10000 embedding_dim=16 max_length=120 trunc_type='post' oov_tok='<oov>' from tensorflow.keras.preprocessing.text import Tokenizer from tensorflow.keras.preprocessing.sequence import pad_sequences tokenizer= Tokenizer(num_words=vocab_size, oov_token=oov_tok) tokenizer.fit_on_texts(training_sentences) word_index=tokenizer.word_index sequences=tokenizer.texts_to_sequences(training_sentences) padded=pad_sequences(sequences, maxlen=max_length, truncating=trunc_type) testing_sequences=tokenizer.texts_to_sequences(testing_sentences) testing_padded=pad_sequences(testing_sequences, maxlen=max_length) from tensorflow.keras.models import Sequential from tensorflow.keras.layers import Dense, Dropout, Embedding
#imdb #convolutional-network #long-short-term-memory #recurrent-neural-network #gated-recurrent-unit #neural networks
In this post, we’re gonna take a close look at one of the well-known Graph neural networks named GCN. First, we’ll get the intuition to see how it works, then we’ll go deeper into the maths behind it.
Many problems are graphs in true nature. In our world, we see many data are graphs, such as molecules, social networks, and paper citations networks.
Examples of graphs. (Picture from )
In the graph, we have node features (the data of nodes) and the structure of the graph (how nodes are connected).
For the former, we can easily get the data from each node. But when it comes to the structure, it is not trivial to extract useful information from it. For example, if 2 nodes are close to one another, should we treat them differently to other pairs? How about high and low degree nodes? In fact, each specific task can consume a lot of time and effort just for Feature Engineering, i.e., to distill the structure into our features.
Feature engineering on graphs. (Picture from )
It would be much better to somehow get both the node features and the structure as the input, and let the machine to figure out what information is useful by itself.
That’s why we need Graph Representation Learning.
We want the graph can learn the “feature engineering” by itself. (Picture from )
Paper: Semi-supervised Classification with Graph Convolutional Networks(2017) 
GCN is a type of convolutional neural network that can work directly on graphs and take advantage of their structural information.
it solves the problem of classifying nodes (such as documents) in a graph (such as a citation network), where labels are only available for a small subset of nodes (semi-supervised learning).
Example of Semi-supervised learning on Graphs. Some nodes dont have labels (unknown nodes).
#graph-neural-networks #graph-convolution-network #deep-learning #neural-networks
Neural networks have been around for a long time, being developed in the 1960s as a way to simulate neural activity for the development of artificial intelligence systems. However, since then they have developed into a useful analytical tool often used in replace of, or in conjunction with, standard statistical models such as regression or classification as they can be used to predict or more a specific output. The main difference, and advantage, in this regard is that neural networks make no initial assumptions as to the form of the relationship or distribution that underlies the data, meaning they can be more flexible and capture non-standard and non-linear relationships between input and output variables, making them incredibly valuable in todays data rich environment.
In this sense, their use has took over the past decade or so, with the fall in costs and increase in ability of general computing power, the rise of large datasets allowing these models to be trained, and the development of frameworks such as TensforFlow and Keras that have allowed people with sufficient hardware (in some cases this is no longer even an requirement through cloud computing), the correct data and an understanding of a given coding language to implement them. This article therefore seeks to be provide a no code introduction to their architecture and how they work so that their implementation and benefits can be better understood.
Firstly, the way these models work is that there is an input layer, one or more hidden layers and an output layer, each of which are connected by layers of synaptic weights¹. The input layer (X) is used to take in scaled values of the input, usually within a standardised range of 0–1. The hidden layers (Z) are then used to define the relationship between the input and output using weights and activation functions. The output layer (Y) then transforms the results from the hidden layers into the predicted values, often also scaled to be within 0–1. The synaptic weights (W) connecting these layers are used in model training to determine the weights assigned to each input and prediction in order to get the best model fit. Visually, this is represented as:
#machine-learning #python #neural-networks #tensorflow #neural-network-algorithm #no code introduction to neural networks
I am not a deep learning researcher, but I’ve come to know a few things about neural networks through various exposures. I’ve always heard that CNN is a type of neural network that’s particularly good at image-related problems. But, what does that really mean? What’s with the word “convolutional”? What’s so unusual about an image-related problem that a different network is required?
Recently I had the opportunity to work on a COVID-19 image classification problem and built a CNN-based classifier using
tensorflow.keras that achieved an 85% accuracy rate. Finally, I think I’ve figured out the answers to those questions. Let me share with you those answers in a math-free way. If you are already familiar with CNNs, this post should feel like a good refresher. If not, take a look, you could gain an intuitive understanding of the motivation behind CNNs and the unique features that define a CNN.
#deep-learning #convolutional-network #data-science #machine-learning #neural-networks