NIPYPE: Neuroimaging in Python: Pipelines and Interfaces

NIPYPE: Neuroimaging in Python: Pipelines and Interfaces

Current neuroimaging software offer users an incredible opportunity to analyze data using a variety of different algorithms. However, this has resulted in a heterogeneous collection of specialized applications without transparent interoperability or a uniform operating interface.

Nipype, an open-source, community-developed initiative under the umbrella of NiPy, is a Python project that provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow. Nipype provides an environment that encourages interactive exploration of algorithms from different packages (e.g., SPM, FSL, FreeSurfer, AFNI, Slicer, ANTS), eases the design of workflows within and between packages, and reduces the learning curve necessary to use different packages. Nipype is creating a collaborative platform for neuroimaging software development in a high-level language and addressing limitations of existing pipeline systems.

Nipype allows you to:

• easily interact with tools from different software packages
• combine processing steps from different software packages
• develop new workflows faster by reusing common steps from old ones
• process data faster by running it in parallel on many cores/machines
• make your research easily reproducible
• share your processing workflows with the community

Documentation

Please see the doc/README.txt document for information on our documentation.

Website

Information specific to Nipype is located here:

http://nipy.org/nipype

Python 2 Statement

Python 2.7 reaches its end-of-life in January 2020, which means it will no longer be maintained by Python developers. Many projects are removing support in advance of this deadline, which will make it increasingly untenable to try to support Python 2, even if we wanted to.

The final series with 2.7 support is 1.3.x. If you have a package using Python 2 and are unable or unwilling to upgrade to Python 3, then you should use the following dependency for Nipype:

nipype<1.4

Bug fixes will be accepted against the maint/1.3.x branch.

Support and Communication

If you have a problem or would like to ask a question about how to do something in Nipype please open an issue to NeuroStars.org with a nipype tag. NeuroStars.org is a platform similar to StackOverflow but dedicated to neuroinformatics.

To participate in the Nipype development related discussions please use the following mailing list:

http://mail.python.org/mailman/listinfo/neuroimaging

Please add [nipype] to the subject line when posting on the mailing list.

You can even hangout with the Nipype developers in their Gitter channel or in the BrainHack Slack channel. (Click here to join the Slack workspace.)

Contributing to the project

If you'd like to contribute to the project please read our guidelines. Please also read through our code of conduct.

Author: Nipy
Source Code: https://github.com/nipy/nipype 
License: View license

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What is GEEK

Buddha Community

Why use Python for Software Development

No programming language is pretty much as diverse as Python. It enables building cutting edge applications effortlessly. Developers are as yet investigating the full capability of end-to-end Python development services in various areas. 

By areas, we mean FinTech, HealthTech, InsureTech, Cybersecurity, and that's just the beginning. These are New Economy areas, and Python has the ability to serve every one of them. The vast majority of them require massive computational abilities. Python's code is dynamic and powerful - equipped for taking care of the heavy traffic and substantial algorithmic capacities. 

Programming advancement is multidimensional today. Endeavor programming requires an intelligent application with AI and ML capacities. Shopper based applications require information examination to convey a superior client experience. Netflix, Trello, and Amazon are genuine instances of such applications. Python assists with building them effortlessly. 

5 Reasons to Utilize Python for Programming Web Apps 

Python can do such numerous things that developers can't discover enough reasons to admire it. Python application development isn't restricted to web and enterprise applications. It is exceptionally adaptable and superb for a wide range of uses.

Robust frameworks 

Python is known for its tools and frameworks. There's a structure for everything. Django is helpful for building web applications, venture applications, logical applications, and mathematical processing. Flask is another web improvement framework with no conditions. 

Web2Py, CherryPy, and Falcon offer incredible capabilities to customize Python development services. A large portion of them are open-source frameworks that allow quick turn of events. 

Simple to read and compose 

Python has an improved sentence structure - one that is like the English language. New engineers for Python can undoubtedly understand where they stand in the development process. The simplicity of composing allows quick application building. 

The motivation behind building Python, as said by its maker Guido Van Rossum, was to empower even beginner engineers to comprehend the programming language. The simple coding likewise permits developers to roll out speedy improvements without getting confused by pointless subtleties. 

Utilized by the best 

Alright - Python isn't simply one more programming language. It should have something, which is the reason the business giants use it. Furthermore, that too for different purposes. Developers at Google use Python to assemble framework organization systems, parallel information pusher, code audit, testing and QA, and substantially more. Netflix utilizes Python web development services for its recommendation algorithm and media player. 

Massive community support 

Python has a steadily developing community that offers enormous help. From amateurs to specialists, there's everybody. There are a lot of instructional exercises, documentation, and guides accessible for Python web development solutions. 

Today, numerous universities start with Python, adding to the quantity of individuals in the community. Frequently, Python designers team up on various tasks and help each other with algorithmic, utilitarian, and application critical thinking. 

Progressive applications 

Python is the greatest supporter of data science, Machine Learning, and Artificial Intelligence at any enterprise software development company. Its utilization cases in cutting edge applications are the most compelling motivation for its prosperity. Python is the second most well known tool after R for data analytics.

The simplicity of getting sorted out, overseeing, and visualizing information through unique libraries makes it ideal for data based applications. TensorFlow for neural networks and OpenCV for computer vision are two of Python's most well known use cases for Machine learning applications.

Summary

Thinking about the advances in programming and innovation, Python is a YES for an assorted scope of utilizations. Game development, web application development services, GUI advancement, ML and AI improvement, Enterprise and customer applications - every one of them uses Python to its full potential. 

The disadvantages of Python web improvement arrangements are regularly disregarded by developers and organizations because of the advantages it gives. They focus on quality over speed and performance over blunders. That is the reason it's a good idea to utilize Python for building the applications of the future.

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Python Tricks Every Developer Should Know

Python is awesome, it’s one of the easiest languages with simple and intuitive syntax but wait, have you ever thought that there might ways to write your python code simpler?

In this tutorial, you’re going to learn a variety of Python tricks that you can use to write your Python code in a more readable and efficient way like a pro.

Let’s get started

Swapping value in Python

Instead of creating a temporary variable to hold the value of the one while swapping, you can do this instead

>>> FirstName = "kalebu"
>>> LastName = "Jordan"
>>> FirstName, LastName = LastName, FirstName 
>>> print(FirstName, LastName)
('Jordan', 'kalebu')

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How to Remove all Duplicate Files on your Drive via Python

Today you’re going to learn how to use Python programming in a way that can ultimately save a lot of space on your drive by removing all the duplicates.

Intro

In many situations you may find yourself having duplicates files on your disk and but when it comes to tracking and checking them manually it can tedious.

Heres a solution

Instead of tracking throughout your disk to see if there is a duplicate, you can automate the process using coding, by writing a program to recursively track through the disk and remove all the found duplicates and that’s what this article is about.

But How do we do it?

If we were to read the whole file and then compare it to the rest of the files recursively through the given directory it will take a very long time, then how do we do it?

The answer is hashing, with hashing can generate a given string of letters and numbers which act as the identity of a given file and if we find any other file with the same identity we gonna delete it.

There’s a variety of hashing algorithms out there such as

• md5
• sha1
• sha224, sha256, sha384 and sha512

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How To Compare Tesla and Ford Company By Using Magic Methods in Python

Magic Methods are the special methods which gives us the ability to access built in syntactical features such as ‘<’, ‘>’, ‘==’, ‘+’ etc…

You must have worked with such methods without knowing them to be as magic methods. Magic methods can be identified with their names which start with __ and ends with __ like init, call, str etc. These methods are also called Dunder Methods, because of their name starting and ending with Double Underscore (Dunder).

Now there are a number of such special methods, which you might have come across too, in Python. We will just be taking an example of a few of them to understand how they work and how we can use them.

1. init

class AnyClass:
    def __init__():
        print("Init called on its own")
obj = AnyClass()

The first example is _init, _and as the name suggests, it is used for initializing objects. Init method is called on its own, ie. whenever an object is created for the class, the init method is called on its own.

The output of the above code will be given below. Note how we did not call the init method and it got invoked as we created an object for class AnyClass.

Init called on its own

2. add

Let’s move to some other example, add gives us the ability to access the built in syntax feature of the character +. Let’s see how,

class AnyClass:
    def __init__(self, var):
        self.some_var = var
    def __add__(self, other_obj):
        print("Calling the add method")
        return self.some_var + other_obj.some_var
obj1 = AnyClass(5)
obj2 = AnyClass(6)
obj1 + obj2

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Tkinter Course - Create Graphic User Interfaces in Python Tutorial. DO NOT MISS!!!

Learn Tkinter in this full course for beginners. Tkinter is the fastest and easiest way to create the Graphic User Interfaces (GUI applications) with Python. Tkinter comes with Python already, so there’s nothing to install!
⭐️Course Contents ⭐️
⌨️ (0:00:00) Intro to Tkinter
⌨️ (0:10:32) Positioning With Tkinter’s Grid System
⌨️ (0:19:29) Creating Buttons
⌨️ (0:29:30) Creating Input Fields
⌨️ (0:38:51) Build A Simple Calculator App
⌨️ (1:18:19) Using Icons, Images, and Exit Buttons
⌨️ (1:27:42) Build an Image Viewer App
⌨️ (1:49:37) Adding A Status Bar
⌨️ (1:59:45) Adding Frames To Your Program
⌨️ (2:07:49) Radio Buttons
⌨️ (2:24:36) Message Boxes
⌨️ (2:35:31) Create New Windows in tKinter
⌨️ (2:44:30) Open Files Dialog Box
⌨️ (2:56:09) Sliders
⌨️ (3:08:25) Checkboxes
⌨️ (3:17:29) Dropdown Menus
⌨️ (3:23:50) Using Databases
⌨️ (3:32:28) Building Out The GUI for our Database App
⌨️ (3:59:48) Delete A Record From Our Database
⌨️ (4:15:18) Update A Record With SQLite
⌨️ (4:42:57) Build a Weather App
⌨️ (5:04:32) Change Colors In our Weather App
⌨️ (5:16:36) Add Zipcode Lookup Form
⌨️ (5:26:22) Matplotlib Charts
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